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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00022.1.g00200.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | GRAS | ||||||||
Protein Properties | Length: 751aa MW: 82784.8 Da PI: 6.466 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 348.6 | 1e-106 | 370 | 741 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal 81 l++lL++cA+av+++d + a++lL++++++asp+gd +qRla++f+e+L+arla+++s +y++l +++ts + l+a+ Zpz_sc00022.1.g00200.1.am.mk 370 LRTLLIHCAQAVATDDRRSATELLKQIKQHASPQGDGTQRLAHCFAEGLQARLAGTGSMVYQSLMAKRTS---AVALLQAY 447 6789************************************************************999998...899***** PP GRAS 82 klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeelee 160 +l+ + + k++++ N++I +a g++++Hi+D++i +G+QWp++l++++ ++gpp++ iTg++ p++g +e++ee Zpz_sc00022.1.g00200.1.am.mk 448 QLYMAAICFKKVAFIFSNNTIFNASLGKKKIHIVDYGIHYGFQWPCFLKQISGMEGGPPEVTITGIDLPQPGfrPTERIEE 528 ***********************************************************************9********* PP GRAS 161 tgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvv 241 tg+rL+++A+e+gvpf++++++a+++e+++ e+L+++ +E+l+Vn+++q ++l+desv +es+rd vL+ +++++P+ +++ Zpz_sc00022.1.g00200.1.am.mk 529 TGRRLSNYAREFGVPFKYHAIAASKMESVRKEDLNIDLDEVLIVNCMYQFKNLMDESVVIESPRDVVLNNIRKMRPHTFIH 609 ********************************************************************************* PP GRAS 242 veqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleea 322 + + + +++ F++rf eal yysalfd l+++ pr+s++r+ +E+ ++gr++ nv+aceg++r+er et+++W+ r ++a Zpz_sc00022.1.g00200.1.am.mk 610 AIVNGSFSAPFFVTRFREALFYYSALFDVLDTTTPRDSDQRMLIEQNIFGRSALNVIACEGTDRVERPETYKQWQVRNQRA 690 ********************************************************************************* PP GRAS 323 GFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 G+k++pl+ ++++ ++ ++ ++ + + ++ ++++l++gWk+r L+++S W Zpz_sc00022.1.g00200.1.am.mk 691 GLKQLPLNRETVEIVRGKVKDCYHKDFVIDIDHHWLLQGWKGRILFAISTW 741 ***********************889************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 61.831 | 344 | 722 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.5E-104 | 370 | 741 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 751 aa Download sequence Send to blast |
MQWKAGEKSP GPKPPLVGNG NAVECWRKVD GVERVMAWRC FCPLELILFR FNLPRISAVS 60 KSPFPPPPSR NLPLPVSTPC PPAAYKSTPS PLSLSSSRAR PRPATHAAAM GSSYDLYQSP 120 GADDPSLYLY LSDLVPDSPS AYLDLPPTPH HEQQQPPPVP AAAADDGAAA GSPEDLVLPY 180 ISRMLMEDDI EDKFFYDYPD NPSLLQAQQP FLEILSNSDD TTTTTTTTSS SGGDHNGDPS 240 PTSSSSDGAS APAPSPAPPV APAVTLSVKE ELVDAAPGNG VGRGRKNPYD HDELEVEGGR 300 SSKQSAVQGE DDATRDMLDR VMMPSHEACV LQMQQLRIAM QEEAAKNEAG GKAGNGKANG 360 RRGGRDVVDL RTLLIHCAQA VATDDRRSAT ELLKQIKQHA SPQGDGTQRL AHCFAEGLQA 420 RLAGTGSMVY QSLMAKRTSA VALLQAYQLY MAAICFKKVA FIFSNNTIFN ASLGKKKIHI 480 VDYGIHYGFQ WPCFLKQISG MEGGPPEVTI TGIDLPQPGF RPTERIEETG RRLSNYAREF 540 GVPFKYHAIA ASKMESVRKE DLNIDLDEVL IVNCMYQFKN LMDESVVIES PRDVVLNNIR 600 KMRPHTFIHA IVNGSFSAPF FVTRFREALF YYSALFDVLD TTTPRDSDQR MLIEQNIFGR 660 SALNVIACEG TDRVERPETY KQWQVRNQRA GLKQLPLNRE TVEIVRGKVK DCYHKDFVID 720 IDHHWLLQGW KGRILFAIST WVANDAGCPY F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 5e-42 | 374 | 741 | 8 | 374 | GRAS family transcription factor containing protein, expressed |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00022.1.g00200.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006664663.2 | 0.0 | PREDICTED: scarecrow-like protein 9, partial | ||||
Refseq | XP_015620149.1 | 0.0 | scarecrow-like protein 34 | ||||
Swissprot | O80933 | 1e-164 | SCL9_ARATH; Scarecrow-like protein 9 | ||||
TrEMBL | A0A287QL73 | 0.0 | A0A287QL73_HORVV; Uncharacterized protein | ||||
STRING | OBART12G16530.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP231 | 31 | 297 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 1e-152 | GRAS family protein |