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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Zpz_sc00022.1.g00010.1.sm.mk |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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| Family |
C3H |
| Protein Properties |
Length: 230aa MW: 24024.9 Da PI: 8.8243 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Zpz_sc00022.1.g00010.1.sm.mk | genome | ZGD | View Nucleic Acid |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 24.7 | 4.2e-08 | 32 | 57 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
kt+ C + Ck+G++C+FaHg+
Zpz_sc00022.1.g00010.1.sm.mk 32 KTRMCTKYNTAEGCKFGEKCHFAHGE 57
9***********************96 PP
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| 2 | zf-CCCH | 40.9 | 3.4e-13 | 197 | 222 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
ykt+lC ++++ GtC +GdrC+FaHg+
Zpz_sc00022.1.g00010.1.sm.mk 197 YKTKLCENYLK-GTCTFGDRCHFAHGE 222
9**********.*************96 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| Gene3D | G3DSA:4.10.1000.10 | 2.8E-13 | 28 | 62 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.27 | 30 | 57 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.45 | 30 | 58 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 6.41E-8 | 31 | 60 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.8E-4 | 32 | 57 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF54791 | 6.43E-14 | 87 | 165 | IPR004088 | K Homology domain, type 1 |
| Gene3D | G3DSA:3.30.1370.10 | 1.2E-14 | 94 | 165 | IPR004088 | K Homology domain, type 1 |
| SMART | SM00322 | 1.0E-10 | 95 | 165 | IPR004087 | K Homology domain |
| PROSITE profile | PS50084 | 14.886 | 96 | 160 | IPR004088 | K Homology domain, type 1 |
| Pfam | PF00013 | 4.5E-11 | 98 | 160 | IPR004088 | K Homology domain, type 1 |
| Gene3D | G3DSA:4.10.1000.10 | 3.8E-15 | 196 | 226 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 5.6E-9 | 196 | 222 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.7E-9 | 196 | 226 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 17.873 | 196 | 223 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.2E-10 | 197 | 222 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 230 aa
Download sequence Send
to blast |
MLNLDSPVVS APTRVPVDHA AVTNSHPSST GKTRMCTKYN TAEGCKFGEK CHFAHGEREL 60
GNPAYMSHEV GGRFGGWPEP RPQTTMGPPA GNFGASATAK ISVDASLAGG IIGKGGANTK 120
HISRVTGVKL SIRDHESDAN LKNIELEGNF DQIKQASDMV GELISTISAS MPAKHPSGPI 180
APAGRGGGGG PGGRGNYKTK LCENYLKGTC TFGDRCHFAH GESEQRRGPA
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