PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00020.1.g00640.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 353aa    MW: 38148.3 Da    PI: 10.4871
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00020.1.g00640.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.21.1e-30287344359
                                     -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                     D+y+WrKYGqK++kgs++pr+YY+C++  gCp++k+ver+ ++p+++ +tYegeHnh+
  Zpz_sc00020.1.g00640.1.sm.mkhc 287 DEYSWRKYGQKPIKGSPHPRGYYKCSTVrGCPARKHVERCVDEPTMLLVTYEGEHNHS 344
                                     9************************9888****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.8E-16237283IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.804.9E-32273344IPR003657WRKY domain
PROSITE profilePS5081129.941280346IPR003657WRKY domain
SuperFamilySSF1182901.7E-26283345IPR003657WRKY domain
SMARTSM007742.4E-36285345IPR003657WRKY domain
PfamPF031063.0E-26287343IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MEEVEVASRA AVESCHRVLA LLSQQQDPAL LRSLASETGE ACAKFRKVVA LLGDTNGGGS  60
GHARGRFSRR GRPLSSLNQK GFSGSGASIE TMPISSAAPS SSTSYMHPRA RINGVSESRG  120
LDFASSSGAH QFGAPKLVQP LSVQFQIGNV AHRYPFPQQP SRQKLQAEIF KRSNSGISLK  180
FESPCPSTAT GTVSSARSFM SSLSMDGSVV SLEGKRPFHL VGAPAASDPV DVQHVPKRRC  240
MGKGEDGRGK CALTGRCHCS KRSRKLRNKR SIKVPAISNK IADIPPDEYS WRKYGQKPIK  300
GSPHPRGYYK CSTVRGCPAR KHVERCVDEP TMLLVTYEGE HNHSCMPTQS AQT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-192823441475Probable WRKY transcription factor 4
2ayd_A3e-19278347775WRKY transcription factor 1
2lex_A4e-192823441475Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00020.1.g00640.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809630.10.0protein WRKY1-like isoform X1
TrEMBLA0A2T7EIW20.0A0A2T7EIW2_9POAL; Uncharacterized protein
STRINGPavir.J38176.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28593887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04670.11e-62WRKY DNA-binding protein 39