PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00016.1.g01110.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | bHLH | ||||||||
Protein Properties | Length: 192aa MW: 20691.8 Da PI: 10.3358 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.3 | 1.5e-09 | 39 | 83 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++r + RR ++ ++f +L+ l+P + K s ++Le++++Y+ksLq Zpz_sc00016.1.g01110.1.sm.mk 39 SKRRKTRRCKLSERFKTLQHLVPGC-----DKSSYNSTLEQTIQYMKSLQ 83 6899********************9.....799999*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.23 | 33 | 82 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.5E-10 | 37 | 88 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.47E-9 | 37 | 87 | No hit | No description |
Pfam | PF00010 | 4.1E-7 | 39 | 83 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.28E-12 | 40 | 97 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.1E-11 | 43 | 91 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MLETELQVEF VTGMRRQEQA RNNASLEDSI VTGSDGSSSK RRKTRRCKLS ERFKTLQHLV 60 PGCDKSSYNS TLEQTIQYMK SLQQQVQALA TTTTTTPSAP SSLPAPAAHP VAQPQYVHPG 120 PPVPLAPMVV LGPVPMVPLG LGRVLPLPHY PAPVVVMPAA ATPMYTATPD PRFARPDAGL 180 GRGSRSSIRG KE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00016.1.g01110.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002442458.1 | 1e-27 | transcription factor APG | ||||
TrEMBL | A0A1Z5R7F3 | 3e-26 | A0A1Z5R7F3_SORBI; Uncharacterized protein | ||||
STRING | Sb08g020300.1 | 5e-27 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6283 | 24 | 52 |