PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00016.1.g01060.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 310aa    MW: 33471.8 Da    PI: 4.6933
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00016.1.g01060.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY955.3e-3090148259
                                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                      D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+++++tY+ eHnh 
  Zpz_sc00016.1.g01060.1.sm.mkhc  90 ADSWTWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRADPTLLQVTYTFEHNHA 148
                                     69*************************998****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.7E-3186150IPR003657WRKY domain
SuperFamilySSF1182901.22E-2588150IPR003657WRKY domain
SMARTSM007742.2E-3689149IPR003657WRKY domain
PROSITE profilePS5081130.82591150IPR003657WRKY domain
PfamPF031063.7E-2691147IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MSSAEDGYCS ADSPRADSGD EPLAAAADAE ESPRSGAGQN KRERDIPSPS SPVPAAKRSR  60
RPVEKRVVSV RIGECGDRAK GASGEGPPPA DSWTWRKYGQ KPIKGSPYPR GYYRCSSSKG  120
CPARKQVERS RADPTLLQVT YTFEHNHASP QPKNSGGCHQ RKQSPRPSAP KSEPTEPAGE  180
QAETGPGYEA AEAPISEAPE PEQEPEQEQK VSVTLVEPAD ITTVAPAATE EEEESFDFGW  240
FDQYPTWHRP ALYASAPALD AVPLLPLEEW ERELQGDDAL FAGLGMLPEC AVVFGRRREL  300
SLAATTAPCS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-19901501779Disease resistance protein RRS1
5w3x_D3e-19901501779Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00016.1.g01060.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817654.11e-137probable WRKY transcription factor 65
TrEMBLA0A3L6SS551e-139A0A3L6SS55_PANMI; Putative WRKY transcription factor 65
STRINGPavir.Eb03138.1.p1e-135(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP70883651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.15e-41WRKY DNA-binding protein 65