PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00016.1.g00520.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 396aa    MW: 41607.4 Da    PI: 5.68
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00016.1.g00520.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.94.9e-17274308135
                            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                     C +C + kTp+WR gp g+ktLCnaCG++y++ +l
  Zpz_sc00016.1.g00520.1.sm.mkhc 274 CLHCESDKTPQWRTGPMGPKTLCNACGVRYKSGRL 308
                                     99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.102.9E-14268305IPR013088Zinc finger, NHR/GATA-type
SMARTSM004011.9E-17268318IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.413268304IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-15270331No hitNo description
CDDcd002022.76E-13273320No hitNo description
PfamPF003206.2E-15274308IPR000679Zinc finger, GATA-type
PROSITE patternPS003440274299IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MEAATESGYY SGAGRERKGA GCVDHFDVDD LAVDDLLVLP YDDDDDEEGD GGGEAAALVD  60
VAGGGGGVVV KEEGVLGNLS TDSSTVTTAM DSCSNSFSGL ADGDFSGELC DPYEQLAELE  120
WLSTYMGEND DFATEDLQKL QLINGIPAGS FSSSAARVLP APAPHTTAAA SATTRQTGMS  180
LPEAPVPGKA RSKRFRPAPG NWSSHPLVLQ PAPASPPSPA STAILPAESG VSFHFLAKKP  240
SKSSKKKDAP PSSSPAQSPC GGSVSAASAE GRRCLHCESD KTPQWRTGPM GPKTLCNACG  300
VRYKSGRLVP EYRPAASPTF VTSKHSNSHR KVLELRRQKE VQHPLAAPPQ HHHQPHVIAG  360
GLVHMQSPLL FDAPPMMVGD DFLVTHHLGP DCRQLI
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00016.1.g00520.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0609504e-83BT060950.1 Zea mays full-length cDNA clone ZM_BFb0075O21 mRNA, complete cds.
GenBankEU9631214e-83EU963121.1 Zea mays clone 257954 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969927.11e-140GATA transcription factor 12
TrEMBLA0A0A9ERW11e-139A0A0A9ERW1_ARUDO; Uncharacterized protein
STRINGSi001735m1e-140(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30253178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.12e-54GATA transcription factor 9