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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00015.1.g00320.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | G2-like | ||||||||
Protein Properties | Length: 108aa MW: 11381.1 Da PI: 4.8385 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 33.9 | 6.9e-11 | 1 | 21 | 36 | 56 |
G2-like 36 mkvkgLtlehvkSHLQkYRla 56 mkv+gLt+++vkSHLQkYRl+ Zpz_sc00015.1.g00320.1.am.mk 1 MKVDGLTNDEVKSHLQKYRLH 21 9******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01557 | 5.2E-8 | 1 | 21 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 7.7E-10 | 1 | 24 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 108 aa Download sequence Send to blast |
MKVDGLTNDE VKSHLQKYRL HTRRASSSDG GDVGQAAMAP EQQCATSQHS TSQSGSPQGP 60 LQLTLSSQGA ASVTGGDSCD GDEEDEDGKS EGYNCREMQR RGTKTSSS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00015.1.g00320.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004963026.1 | 2e-37 | transcription factor HHO3 | ||||
TrEMBL | A0A0A9CL96 | 2e-43 | A0A0A9CL96_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.J13382.1.p | 2e-38 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5582 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49560.1 | 1e-12 | G2-like family protein |