PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00013.1.g00630.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 541aa    MW: 59099.3 Da    PI: 5.9689
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00013.1.g00630.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS343.63.3e-1051725413374
                          GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalk 82 
                                   + Ll+c +  +  d+ la   L +++  a  dgdp +R+a+yf+ ALa+rla   + + ++a+ ++ +    s+e +  +k
  Zpz_sc00013.1.g00630.1.am.mk 172 QSLLACSRTAA-ADAGLAAVELVKVRAAAFDDGDPAERVAFYFADALARRLACdGGARPFSAVDCRFA----SDELTLCYK 247
                                   78999999655.588899999999****************************8344455555555555....699999*** PP

                          GRAS  83 lfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeelee 160
                                   ++++++P+ kf+hltaNqaIleav  ++++Hi+Df+i qG+QW+aLlqaL++Rpeg+p ++Ri gv sp  g   + +l +
  Zpz_sc00013.1.g00630.1.am.mk 248 TLNDACPYSKFAHLTANQAILEAVGAATKIHIVDFGIVQGIQWAALLQALTTRPEGKPsRVRISGVPSPFLGskPTASLAA 328
                                   ******************************************************887769********9887889999*** PP

                          GRAS 161 tgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvv 241
                                   t  rL++fA+ lgv+fef + + + +++l  +++ v+++E++aVn++lql++lld++ ++ +   +vL+l ksl+P vv++
  Zpz_sc00013.1.g00630.1.am.mk 329 TSARLRDFAKLLGVDFEFVP-LLRPVHELGRSDFLVERDETVAVNFMLQLYHLLDDTDEQVK---RVLRLAKSLNPSVVTL 405
                                   ********************.599******************************88888888...**************** PP

                          GRAS 242 veqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva.cegaerrerhetlekWrerlee 321
                                    e e+++n+  F++rf++al yy+++f+sl++ ++r+s er+ vEr ++g++i+ ++   egaer+ r+   ++W+  +e 
  Zpz_sc00013.1.g00630.1.am.mk 406 GEYEVSLNRVGFVDRFANALCYYMSVFESLDVAMARNSPERARVERCMFGERIRRAIGlEEGAERTDRMAGCREWHTLMEW 486
                                   *********************************************************7267899***************** PP

                          GRAS 322 aGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                                   +GF+pv+ls++a++qa+lll +++ +  y++ e++ +++ l W++rpL++vS+Wr
  Zpz_sc00013.1.g00630.1.am.mk 487 CGFEPVRLSNYAMSQADLLLWNYDsKYKYSLVERKPAFLsLAWEKRPLLTVSVWR 541
                                   ************************77789999***99999**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF819951.6E-5546No hitNo description
SuperFamilySSF819951.6E-588129No hitNo description
PROSITE profilePS5098554.701144519IPR005202Transcription factor GRAS
PfamPF035141.1E-102172541IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MAIAQQVIQQ QQQQQHQRHH HHHLPPIPMP PRHAPPGQAL PHGQIPAASY GGGAWPHSEH  60
FFADPFVGGP PAADAVFSDI SGAADFDSDG WMESLIAEAP VFADSDLDHL IFTTPPPPVP  120
LPAPAPEPVE EAASLQPKAA APVSVPQPAT ATPTACSSPN SLDASCSAPI LQSLLACSRT  180
AAADAGLAAV ELVKVRAAAF DDGDPAERVA FYFADALARR LACDGGARPF SAVDCRFASD  240
ELTLCYKTLN DACPYSKFAH LTANQAILEA VGAATKIHIV DFGIVQGIQW AALLQALTTR  300
PEGKPSRVRI SGVPSPFLGS KPTASLAATS ARLRDFAKLL GVDFEFVPLL RPVHELGRSD  360
FLVERDETVA VNFMLQLYHL LDDTDEQVKR VLRLAKSLNP SVVTLGEYEV SLNRVGFVDR  420
FANALCYYMS VFESLDVAMA RNSPERARVE RCMFGERIRR AIGLEEGAER TDRMAGCREW  480
HTLMEWCGFE PVRLSNYAMS QADLLLWNYD SKYKYSLVER KPAFLSLAWE KRPLLTVSVW  540
R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A0.01675411375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (By similarity). Binds DNA in vitro (PubMed:27081181). {ECO:0000250|UniProtKB:A0A024B7I0, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:27081181}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00013.1.g00630.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008665334.10.0scarecrow-like protein 4
SwissprotQ53K160.0SCL7_ORYSJ; SCARECROW-LIKE protein 7
TrEMBLA0A317YC810.0A0A317YC81_MAIZE; Scarecrow-like protein 4
STRINGSb01g009740.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85693748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.11e-142GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Li S, et al.
    Crystal Structure of the GRAS Domain of SCARECROW-LIKE7 in Oryza sativa.
    Plant Cell, 2016. 28(5): p. 1025-34
    [PMID:27081181]