PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00011.1.g00260.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 592aa MW: 63614.8 Da PI: 9.1737

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00011.1.g00260.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.4	5.7e-06	181	203	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cgk F r nL+ H r H Zpz_sc00011.1.g00260.1.am.mk 181 FVCEICGKGFQRDQNLQLHRRGH 203 89*******************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.39E-7	180	203	No hit	No description
SMART	SM00355	0.012	181	203	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.614	181	203	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	1.7E-5	181	203	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	183	203	IPR007087	Zinc finger, C2H2
SMART	SM00355	130	224	254	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	1.39E-7	254	279	No hit	No description
SMART	SM00355	160	259	279	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 592 aa Download sequence Send to blast
MVLALVVPFS LSPSSPSLLR RYLLTLFLSP RRLSLSLFLS ASAIKAGRFL LSLSPLRAAA 60 ARCKLSLSPG AWCLLAWCGE AALSSASQFS HTPVSSHRSS FFMFHQQQLL QEQGEAADQD 120 SSMSNLTSSA SGPNNPPPPP SPAPAASAGN NKRKRSLPGN PDPDAEVVAL SPATLVATNR 180 FVCEICGKGF QRDQNLQLHR RGHNLPWKLK QRGTGKEAAR KKVYVCPEAS CVHHDPARAL 240 GDLTGIKKHF FRKHGEKKWK CDKCSKKYAV HSDWKAHSKI CGTREYKCDC GTIFSRRDSF 300 ITHRAFCDAL TEESARAIGL NAAMHGAAPV HQALLFSSTS HSQQVMQQQQ HQELAAFQDQ 360 QPQQEVMQPQ PPPPPPQQVQ AASQQQQHCN YAMKTEMPSP WPTMPYDHHA HPLLQPLCAQ 420 SSATSAPPPP QQQQVPRASA HLSATALLQK AAQMGATICT AGGGGAHYTQ MAGAATSAPG 480 SASFGLGLPR LNAQQDAAMG GLARSTSHGR SGEDGGGGGG ANEGMTRDFL GLRAFSHRDI 540 LNLAGLDSCI GAVNANTSMG CYEPQQHAQA QPQQQQQQQS NNEQWHGMGS HG

Sequence ? help Back to Top

Protein Sequence Length: 592 aa Download sequence Send to blast

MVLALVVPFS LSPSSPSLLR RYLLTLFLSP RRLSLSLFLS ASAIKAGRFL LSLSPLRAAA  60
ARCKLSLSPG AWCLLAWCGE AALSSASQFS HTPVSSHRSS FFMFHQQQLL QEQGEAADQD  120
SSMSNLTSSA SGPNNPPPPP SPAPAASAGN NKRKRSLPGN PDPDAEVVAL SPATLVATNR  180
FVCEICGKGF QRDQNLQLHR RGHNLPWKLK QRGTGKEAAR KKVYVCPEAS CVHHDPARAL  240
GDLTGIKKHF FRKHGEKKWK CDKCSKKYAV HSDWKAHSKI CGTREYKCDC GTIFSRRDSF  300
ITHRAFCDAL TEESARAIGL NAAMHGAAPV HQALLFSSTS HSQQVMQQQQ HQELAAFQDQ  360
QPQQEVMQPQ PPPPPPQQVQ AASQQQQHCN YAMKTEMPSP WPTMPYDHHA HPLLQPLCAQ  420
SSATSAPPPP QQQQVPRASA HLSATALLQK AAQMGATICT AGGGGAHYTQ MAGAATSAPG  480
SASFGLGLPR LNAQQDAAMG GLARSTSHGR SGEDGGGGGG ANEGMTRDFL GLRAFSHRDI  540
LNLAGLDSCI GAVNANTSMG CYEPQQHAQA QPQQQQQQQS NNEQWHGMGS HG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	4e-34	255	321	3	69	Zinc finger protein JACKDAW
5b3h_F	4e-34	255	321	3	69	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00011.1.g00260.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU956926	0.0	EU956926.1 Zea mays clone 1577561 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004969529.1	0.0	protein indeterminate-domain 7
Swissprot	Q9LRW7	1e-112	IDD11_ARATH; Protein indeterminate-domain 11
TrEMBL	K3XHB6	0.0	K3XHB6_SETIT; Uncharacterized protein
STRING	Si001287m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP202	38	320

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45260.1	2e-92	C2H2-like zinc finger protein

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]