PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00008.1.g00110.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 254aa    MW: 28164.8 Da    PI: 10.4382
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00008.1.g00110.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000145880123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  y+C+ C + F++   L  H+++H
  Zpz_sc00008.1.g00110.1.am.mk 58 YSCSFCQREFRSAQALGGHMNVH 80
                                  99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.55E-65585No hitNo description
PROSITE profilePS5015711.2615885IPR007087Zinc finger, C2H2
SMARTSM003550.00495880IPR015880Zinc finger, C2H2-like
PfamPF139122.4E-55881IPR007087Zinc finger, C2H2
PROSITE patternPS0002806080IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MAEQISKYWG SARSSSSTSP IIPSWATPYS SEPSWEEQAF ARDAAAHLGG CVWPPRSYSC  60
SFCQREFRSA QALGGHMNVH RRDRALLRQG SSPDDGQEAS VEQPKQRPSF SRAVSNPSTT  120
APPPSYLTSI IKESRNNLFM TMRVEATDQC DDVELRRMKR RPAETTFPAR RRRSKARMEA  180
IQCQSSPAGT GREASHHCRV TGTWAFGTMA KGMSLHPSKL MNAMVLGLTP PPLNRRVPWT  240
QRGDGVLQSS VCHG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-125380229superman protein
2l1o_A1e-125380229Transcriptional regulator SUPERMAN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158172KRRPAETTFPARRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00008.1.g00110.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828169.16e-52uncharacterized protein LOC112903166
TrEMBLA0A0A9VPW54e-63A0A0A9VPW5_ARUDO; Uncharacterized protein
STRINGPavir.Ha00323.1.p2e-52(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78452943
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.18e-25zinc-finger protein 10