PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00007.1.g01450.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 403aa    MW: 44565.7 Da    PI: 4.6725
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00007.1.g01450.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1093.4e-34491412103
                                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEE CS
                    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiwe 80 
                                     Fl+k+y++++d++++++isw + g sfv++d++ f++++Lp++Fkh++f+SF+RQLn+YgF+kv+ ++         we
  Zpz_sc00007.1.g01450.1.sm.mkhc  49 FLTKVYDMVSDPATDSVISWGAGGGSFVIWDSHAFERDLLPRHFKHNHFTSFIRQLNTYGFHKVDPDR---------WE 118
                                     9****************************************************************999.........** PP

                                     EEESXXXXXXXXXXXXXXXXXXX CS
                    HSF_DNA-bind  81 FkhksFkkgkkellekikrkkse 103
                                     ++++ F k++k+ll++ikrkk++
  Zpz_sc00007.1.g01450.1.sm.mkhc 119 WANEGFIKDQKHLLKSIKRKKKT 141
                                     ********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.6E-5445138IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.99E-3445138IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.6E-3646138IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.6E-174972IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.0E-3049138IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-178799IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-17100112IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MGSKKRSPQP AAGGGGEAPG DVGAPPARKD PALAPPVGVV PKPPDVAPFL TKVYDMVSDP  60
ATDSVISWGA GGGSFVIWDS HAFERDLLPR HFKHNHFTSF IRQLNTYGFH KVDPDRWEWA  120
NEGFIKDQKH LLKSIKRKKK TSQEAPDPPQ APVKPAPGTE NIEIGNYGGL EKEVETLKRD  180
KTLLMQQLVD LRHYQQSSGL ELQNLIQRLH VMEQNQQQMM ALLAIVVQNP DFLNQLVQQQ  240
RRNNWWNDDG SKKRRFIALD RGPAAEQENS GAGAPIIQYR SPVPEVSNQA IPVDGGFCAT  300
PVESDSSPAL AMPMDAETTS NNDDTLGSTR DHFTGSPGLC DWEDVDMDAL FKDLDSMDTS  360
AENDAQMEVP LSVDDYPQLE RDCQMEAQQN CRNPQFADVS AEA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-224313814120Heat shock factor protein 1
5d5u_B2e-224313823129Heat shock factor protein 1
5d5v_B2e-224313823129Heat shock factor protein 1
5d5v_D2e-224313823129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00007.1.g01450.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002468244.10.0heat stress transcription factor A-9
RefseqXP_021306702.10.0heat stress transcription factor A-9
SwissprotQ10PR41e-179HSFA9_ORYSJ; Heat stress transcription factor A-9
TrEMBLA0A1E5WFT30.0A0A1E5WFT3_9POAL; Heat stress transcription factor A-9
STRINGSb01g042370.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114943039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02990.12e-61heat shock transcription factor A1E
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]