PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00007.1.g00490.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 388aa    MW: 41908 Da    PI: 8.3757
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00007.1.g00490.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.00042237259123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C++C + F ++  L  H++ H
  Zpz_sc00007.1.g00490.1.am.mk 237 FTCNYCQRKFFSSQALGGHQNAH 259
                                   89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.79E-6235264No hitNo description
PROSITE profilePS5015711.323237264IPR007087Zinc finger, C2H2
PROSITE patternPS000280239259IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MPLVLQDDTY REKCHPKRVP GASTQATTTP SHRTEIHPSM DQAKSQSSGD QRQRNHKLQC  60
TPIHKDTPGR GDAPREDEGP ERAKERRGTH NPDKNLMALH ALQPTRGTHA FSASTLSLSL  120
ASVFLRLWLR CCEAACRILL GVVRSRRVRQ EGKKRRQGFC HHPGMNGEEI CQAPGDDVSE  180
ISSQAASNSS GRVTLDLSLT VAAAAAATTE SSTTDNSNGD DTQAGPAVAA REPARVFTCN  240
YCQRKFFSSQ ALGGHQNAHR RERTLARCAL RIDAAAPCGY FADVASLPLY GSGLYPIGIQ  300
AHASAAHPEX XXXSAAHPEP RHLAAAAVEP RRARGLLAPM PFFVGDDELS FGWPRSFRPA  360
AVAAEPAGSD IISAVVHAVE EPDLTLRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00007.1.g00490.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001300990.17e-88zinc finger protein 7
RefseqXP_008680366.17e-88zinc finger protein 7 isoform X1
RefseqXP_008680370.17e-88zinc finger protein 7 isoform X1
RefseqXP_023158235.17e-88zinc finger protein 7 isoform X1
TrEMBLA0A0A8XT862e-91A0A0A8XT86_ARUDO; Uncharacterized protein
STRINGGRMZM2G157197_P013e-87(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98473041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.19e-27zinc finger protein 4