PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C3H

Protein Properties

Length: 325aa MW: 33785.8 Da PI: 6.0236

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00004.1.g01110.1.sm.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.1	6.3e-08	234	254	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C ++ar G+Ck G++C+F Hg Zpz_sc00004.1.g01110.1.sm.mk 234 PCLYYAR-GFCKNGSSCRFVHG 254 8****.***********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	2.88E-5	232	254	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.7E-5	233	254	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.253	234	256	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.2E-5	234	254	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MDAYEATKVV FSRIQALDPD HAAKIMGLLL IQDHGEKEMI RLAFGPESLL HAVMAKARKD 60 LGLLLPASPT SVAAAGHAPF LQLPRQSSGR AGAGAPSPLS VSSPSSWAQA PAFSRSNNGS 120 NGSTEDAAGV DGEELPSPVN GGAAPFFPQG RDALLEDMQL PEQLAFLNEG GVNPAHQFPS 180 FDGGECPSPG PGDGGGPFQY GLGWPNGGPA HRRSASVNEL CLGGGGADGF VWKPCLYYAR 240 GFCKNGSSCR FVHGGLPDDA AALSSTRMDA ADQQQQHCQD FLLRSKSQLL GPAAFPYSPT 300 GSLPGSPSAA GKCLSLLLQQ QQHDR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00004.1.g01110.1.sm.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU975727	1e-76	EU975727.1 Zea mays clone 498431 nucleic acid binding protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002467925.1	1e-163	zinc finger CCCH domain-containing protein 22 isoform X1
Refseq	XP_021311470.1	1e-163	zinc finger CCCH domain-containing protein 22 isoform X2
Swissprot	Q10M00	1e-151	C3H22_ORYSJ; Zinc finger CCCH domain-containing protein 22
TrEMBL	A0A3L6TFW3	1e-171	A0A3L6TFW3_PANMI; Zinc finger CCCH domain-containing protein 22-like
STRING	Sb01g036490.1	1e-162	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1433	11	15

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]