PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00004.1.g00620.1.am.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bZIP
Protein Properties Length: 428aa    MW: 46216.7 Da    PI: 6.7512
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00004.1.g00620.1.am.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_126.71.2e-082402791352
                                     HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                          bZIP_1  13 NReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 
                                     NR +A rs +RK  +i eLe+kv++L++e ++L  +l   
  Zpz_sc00004.1.g00620.1.am.mkhc 240 NRQSAARSKERKARYITELERKVQTLQTEATTLSAQLTLF 279
                                     *********************************9888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.0E-7232292IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.52E-9237283No hitNo description
CDDcd147033.53E-20237282No hitNo description
PfamPF001709.7E-7239278IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.6E-6240283No hitNo description
PROSITE profilePS502179.036240293IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
LNETAAARSS RARDLYPPTT PACVCHRPTA TGANNALARA GTTEDTHTRG RERARRPDGR  60
AMQQPEPADP AXXXPGAARP GAHHRRARSE VAFRFPDDLD LGGCGGPGGD GLNEISSEVD  120
LFSTFMDIEK ISSAGPAESS SPPHPKHRHS TSVDGSGLFF STGSGGGSAA SLADVLEAKK  180
AMSPEQLAEL AAIDPKRAKR CCLLDLSPIL TDLPTTIVRP QLASDLTYFP LNDAAEILAN  240
RQSAARSKER KARYITELER KVQTLQTEAT TLSAQLTLFQ RDTTGLSAEN AELKISLQAM  300
EQQAQLRDAL NDALKQELER LKLATGEATN SDEMYNMRFH HLPCNSSFFP LSQQNTAQHQ  360
GGAQLPPAFH LPHHNVPNYQ ILSHPNTRQD IMQQDSIGRF QGLDIGKGPL VVKSESSSIS  420
ASESSSTF
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:14704272}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00004.1.g00620.1.am.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795608.11e-156transcription factor RF2b
SwissprotQ6S4P41e-141RF2B_ORYSJ; Transcription factor RF2b
TrEMBLA0A0A9NWC61e-158A0A0A9NWC6_ARUDO; Uncharacterized protein
STRINGSi036380m1e-149(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26833683
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40620.11e-61bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Dai S,Zhang Z,Bick J,Beachy RN
    Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus.
    J. Gen. Virol., 2006. 87(Pt 3): p. 715-22
    [PMID:16476995]
  3. Liu Y,Dai S,Beachy RN
    Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription.
    Biochem. J., 2007. 405(2): p. 243-9
    [PMID:17371296]
  4. Dai S, et al.
    Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease.
    Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6
    [PMID:19104064]