PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00002.1.g00420.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GeBP
Protein Properties Length: 339aa    MW: 36339.6 Da    PI: 4.5901
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00002.1.g00420.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573103.22.2e-3270169297
                        DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkep 78 
                                   lfqrlw++eDeiv+L+++ +f+a++g+   +++ d++ fye ++++++  ++ksqlveK+rrLK+K++++v++ +  g ++
  Zpz_sc00002.1.g00420.1.am.mk  70 LFQRLWTDEDEIVILRAFAEFTAQRGTafASHQyDTTPFYEDMRGRLQTGFTKSQLVEKLRRLKRKYRNCVDRlRVAGPNF 150
                                   69*************************9977778***************************************88899*** PP

                        DUF573  79 sfskehdqkifelskkiWg 97 
                                   sf+++h+q ife+++ iW+
  Zpz_sc00002.1.g00420.1.am.mk 151 SFRSPHEQAIFEIARTIWR 169
                                   ******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.7E-2971168IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MFPMVDDPSA AGAGVMISSF PDADAYGNGD SEDIDFAGDP NSHASFSAAP ATAPASAGAG  60
GSGSGERRAL FQRLWTDEDE IVILRAFAEF TAQRGTAFAS HQYDTTPFYE DMRGRLQTGF  120
TKSQLVEKLR RLKRKYRNCV DRLRVAGPNF SFRSPHEQAI FEIARTIWRP ASDKHGRDSD  180
DEGNDDGLAI DAAAAAARAP MPAMTTEDAL PSFPQPTAMD GTGTVTMEQP AAAGLPAMLY  240
AAATVATTTG TAENPILASL FKEMFRSMLN ISSSSATLGL EPPPAIPGLP MDGEKWRQQR  300
ILELEVYLRR IALLQDQAQA ALEELRSAPP QYGAGGTNT
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00002.1.g00420.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0876801e-127BT087680.1 Zea mays full-length cDNA clone ZM_BFb0156A22 mRNA, complete cds.
GenBankEU9542301e-127EU954230.1 Zea mays clone 1459363 hypothetical protein mRNA, complete cds.
GenBankJX4285201e-127JX428520.1 Zea mays subsp. mays clone pUT3119 GBP18 GeBP type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794014.11e-143probable transcription factor At3g04930
TrEMBLA0A2T7CC961e-142A0A2T7CC96_9POAL; Uncharacterized protein
TrEMBLA0A2T8I4R31e-142A0A2T8I4R3_9POAL; Uncharacterized protein
STRINGGRMZM2G026417_P011e-139(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.23e-32DNA-binding storekeeper protein-related transcriptional regulator