 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Zpz_sc00001.1.g02480.1.am.mk |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
| Family |
LBD |
| Protein Properties |
Length: 261aa MW: 28058.6 Da PI: 7.1002 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Zpz_sc00001.1.g02480.1.am.mk | genome | ZGD | View Nucleic Acid |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 65.5 | 1.3e-20 | 53 | 102 | 1 | 50 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalp 50
+CaaCk+lrr+Ca++Cvlapyfp ++p+kf +h++FGasn++kll+
Zpz_sc00001.1.g02480.1.am.mk 53 PCAACKILRRRCADGCVLAPYFPPTEPAKFTTAHRVFGASNIIKLLQVRT 102
7********************************************98644 PP
|
| 2 | DUF260 | 51.6 | 2.8e-16 | 131 | 186 | 45 | 100 |
DUF260 45 llkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
+ ++lpe+ r da+ss+vyeAear+rdPvyG++g++ +lq+q ++lk++la++++
Zpz_sc00001.1.g02480.1.am.mk 131 VSQDLPESSRADAVSSMVYEAEARLRDPVYGCAGTVCRLQKQANELKVQLARAQAD 186
67899**********************************************99875 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 261 aa
Download sequence Send
to blast |
MDCSNASTGT TAEHSYRSES PPSLVSTSCS PPPPSLPAAQ LIGNVAPTVV MSPCAACKIL 60
RRRCADGCVL APYFPPTEPA KFTTAHRVFG ASNIIKLLQV RTVQSQASRA TRGHHNTYTH 120
GNVLTGAFVP VSQDLPESSR ADAVSSMVYE AEARLRDPVY GCAGTVCRLQ KQANELKVQL 180
ARAQADLLNA QAQHANLLAL VCVEVANRGD SQRQQQQPSP PLMEYGGSCS EVGNAGYQMF 240
YDDSDLLDSA TWPVHEARLW T
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC137074 | 4e-79 | AC137074.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0022M22, from chromosome 3, complete sequence. |
| GenBank | AK072515 | 4e-79 | AK072515.1 Oryza sativa Japonica Group cDNA clone:J023131K07, full insert sequence. |
| GenBank | AP014959 | 4e-79 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012611 | 4e-79 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
| GenBank | CT832143 | 4e-79 | CT832143.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN027J24, full insert sequence. |
