PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zpz_sc00001.1.g01650.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Dof

Protein Properties

Length: 465aa MW: 48515.8 Da PI: 9.0225

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00001.1.g01650.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.9	2.6e-39	84	144	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+alkcprCdstntkfCyynnyslsqPr+fCkaCrryWt GG+lrnvPvGgg+r+nk+ss Zpz_sc00001.1.g01650.1.am.mk 84 PERALKCPRCDSTNTKFCYYNNYSLSQPRHFCKACRRYWTSGGSLRNVPVGGGCRRNKRSS 144 68899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-34	68	140	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.2E-33	86	142	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.721	88	142	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	90	126	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence Send to blast
MVFTSVPAYL DPPIWNSQQG QQPRASGGGD APLLPVGPAA ATGMAPEATG LPSSSTAAAS 60 AAGAAQTRPN SMAERARVAR MPQPERALKC PRCDSTNTKF CYYNNYSLSQ PRHFCKACRR 120 YWTSGGSLRN VPVGGGCRRN KRSSKSSSAG ASSSSKPSSS ARQLPSGPSS TPSTPGGVTS 180 GIIPSGLNSL SHQYLPFLGS MQQPGGNLGL AFSAGLPPLG MQHVDTGDQF PVASGGASLD 240 QWRVQQQQHQ VQFPFLAGGV LDLQPRLQMY QLGLEANRVS SGSPASAFTL GALGQASGTP 300 ARQEGTMKLD LDDSKGQEMS LQRQYMAALR HGDGIWDGNA GGSGGNGGGN DGATWPMNIP 360 GFCSSSTGDG GDHMASDGGG AARRQAEECV APHAIGRPGH QRQRVNQKQR GKKTGPRTTS 420 KADEMSEADQ SEQRTEAKAR LEEGHACQAD SNWGSFTFST PIMCC

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence Send to blast

MVFTSVPAYL DPPIWNSQQG QQPRASGGGD APLLPVGPAA ATGMAPEATG LPSSSTAAAS  60
AAGAAQTRPN SMAERARVAR MPQPERALKC PRCDSTNTKF CYYNNYSLSQ PRHFCKACRR  120
YWTSGGSLRN VPVGGGCRRN KRSSKSSSAG ASSSSKPSSS ARQLPSGPSS TPSTPGGVTS  180
GIIPSGLNSL SHQYLPFLGS MQQPGGNLGL AFSAGLPPLG MQHVDTGDQF PVASGGASLD  240
QWRVQQQQHQ VQFPFLAGGV LDLQPRLQMY QLGLEANRVS SGSPASAFTL GALGQASGTP  300
ARQEGTMKLD LDDSKGQEMS LQRQYMAALR HGDGIWDGNA GGSGGNGGGN DGATWPMNIP  360
GFCSSSTGDG GDHMASDGGG AARRQAEECV APHAIGRPGH QRQRVNQKQR GKKTGPRTTS  420
KADEMSEADQ SEQRTEAKAR LEEGHACQAD SNWGSFTFST PIMCC

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00001.1.g01650.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025791451.1	1e-141	dof zinc finger protein DOF5.1-like isoform X2
TrEMBL	A0A2S3IRW0	1e-140	A0A2S3IRW0_9POAL; Uncharacterized protein
STRING	Pavir.J14669.1.p	1e-138	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12301	24	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02460.1	9e-40	Dof family protein