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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00001.1.g01650.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | Dof | ||||||||
Protein Properties | Length: 465aa MW: 48515.8 Da PI: 9.0225 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.9 | 2.6e-39 | 84 | 144 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+alkcprCdstntkfCyynnyslsqPr+fCkaCrryWt GG+lrnvPvGgg+r+nk+ss Zpz_sc00001.1.g01650.1.am.mk 84 PERALKCPRCDSTNTKFCYYNNYSLSQPRHFCKACRRYWTSGGSLRNVPVGGGCRRNKRSS 144 68899*****************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 4.0E-34 | 68 | 140 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 6.2E-33 | 86 | 142 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.721 | 88 | 142 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 90 | 126 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 465 aa Download sequence Send to blast |
MVFTSVPAYL DPPIWNSQQG QQPRASGGGD APLLPVGPAA ATGMAPEATG LPSSSTAAAS 60 AAGAAQTRPN SMAERARVAR MPQPERALKC PRCDSTNTKF CYYNNYSLSQ PRHFCKACRR 120 YWTSGGSLRN VPVGGGCRRN KRSSKSSSAG ASSSSKPSSS ARQLPSGPSS TPSTPGGVTS 180 GIIPSGLNSL SHQYLPFLGS MQQPGGNLGL AFSAGLPPLG MQHVDTGDQF PVASGGASLD 240 QWRVQQQQHQ VQFPFLAGGV LDLQPRLQMY QLGLEANRVS SGSPASAFTL GALGQASGTP 300 ARQEGTMKLD LDDSKGQEMS LQRQYMAALR HGDGIWDGNA GGSGGNGGGN DGATWPMNIP 360 GFCSSSTGDG GDHMASDGGG AARRQAEECV APHAIGRPGH QRQRVNQKQR GKKTGPRTTS 420 KADEMSEADQ SEQRTEAKAR LEEGHACQAD SNWGSFTFST PIMCC |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00001.1.g01650.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025791451.1 | 1e-141 | dof zinc finger protein DOF5.1-like isoform X2 | ||||
TrEMBL | A0A2S3IRW0 | 1e-140 | A0A2S3IRW0_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J14669.1.p | 1e-138 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12301 | 24 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02460.1 | 9e-40 | Dof family protein |