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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Zosma9g00280.1 |
| Common Name | ZOSMA_9G00280 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
|
| Family |
SRS |
| Protein Properties |
Length: 329aa MW: 34479.3 Da PI: 8.6545 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Zosma9g00280.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 208.2 | 2.1e-64 | 119 | 273 | 2 | 154 |
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel....kskkqsalsstkls 92
+sgta+CqdCGnqakkdC+h+RCRtCCksrgfdC+thvkstWvpaa+rre q + + +s ++++sk++r +++++++s+t+ s
Zosma9g00280.1 119 SSGTATCQDCGNQAKKDCTHRRCRTCCKSRGFDCSTHVKSTWVPAARRRESQIS--GCNINIGSSGSTSTSKKPRLAggnhVTAAATTTSNTSNS 211
57999*********************************************7554..445556666677888888877443334444444445555 PP
DUF702 93 saeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
+++ +++ + ++lP +vs++avf+cv+v+s+ddge e+aYq+ v igGh+fkG+LydqGl++
Zosma9g00280.1 212 NTTISSTHHEEKLPGQVSAPAVFKCVKVTSIDDGEGEYAYQAMVRIGGHIFKGFLYDQGLKD 273
555555566666***********************************************976 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 329 aa
Download sequence Send
to blast |
MSMVGLRDVL FVTPASGGGS GGEQQQSLIP VISTATPYHL DDRNNVTAIH HHLWQQQQQQ 60
QPQQQMALPP PLSSSYSTNP SPNLRKPTVM PLATMLESST LPTGIIGGSG NVLLQSLSSS 120
GTATCQDCGN QAKKDCTHRR CRTCCKSRGF DCSTHVKSTW VPAARRRESQ ISGCNINIGS 180
SGSTSTSKKP RLAGGNHVTA AATTTSNTSN SNTTISSTHH EEKLPGQVSA PAVFKCVKVT 240
SIDDGEGEYA YQAMVRIGGH IFKGFLYDQG LKDRDKPDLP NKNSTMPNLS ELHLGGGGGS 300
AAGGSHGHNS NFLDGGGAAA AFGNHNIN*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT5G12330.2 | 3e-52 | Lateral root primordium (LRP) protein-related |
