PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma9g00010.1

Common Name

ZOSMA_9G00010

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

bHLH

Protein Properties

Length: 305aa MW: 32799.7 Da PI: 6.7641

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma9g00010.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.1	0.00035	181	219	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq Zosma9g00010.1 181 RKEKLGDRITSLHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 219 6678889999999999998.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.633	169	218	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.58E-5	179	223	No hit	No description
SuperFamily	SSF47459	4.06E-10	179	230	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.4E-7	183	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MMGSGGWWNL KHQSEQQQQQ QISPVLPSSS STSSPSFSSF PQYPLPSVPW HDTQDLPESW 60 SQLLLGGLVD EDMRCSSYTP FQTHANGSSS SSMVDVKQER IETGSPWNQI LPVSVSSSPR 120 SSCITNIMDF ATTTTTTAKL DGHPKPDVSS ECNSTSSGSA LKKARRAQGG GSSAQSCFKV 180 RKEKLGDRIT SLHQLVSPFG KTDTASVLLE AIGYIRFLQS QIETLSSPYM GGSGQGEGSC 240 IFPEDPGQLL NDACLKRRGA IIDQKKTDLK SKGLCLVPIS CTMHVDNDNG ADYWTPPGLG 300 VAFR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008783244.1	1e-104	transcription factor bHLH68-like
Swissprot	Q8S3D1	1e-62	BH068_ARATH; Transcription factor bHLH68
TrEMBL	A0A0K9NGJ9	0.0	A0A0K9NGJ9_ZOSMR; BHLH transcription factor-like protein
STRING	XP_008783244.1	1e-103	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2167	8	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	6e-64	bHLH family protein

Link Out ? help Back to Top
Phytozome	Zosma9g00010.1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Le Hir R, et al. AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana. Physiol Plant, 2017. 160(3): p. 312-327 [PMID:28369972] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]