PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma99g00720.1
Common NameZOSMA_99G00720
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family WRKY
Protein Properties Length: 305aa    MW: 33881.5 Da    PI: 6.7743
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma99g00720.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.97.5e-32160217259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dgy+WrKYGqK+vk+s++prsYYrCt+++Cpvkk+ver  e+p++v +tYeg+H h+
  Zosma99g00720.1 160 EDGYRWRKYGQKNVKNSPYPRSYYRCTTRNCPVKKRVERMFENPSTVMTTYEGQHIHQ 217
                      8*******************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-31146219IPR003657WRKY domain
SuperFamilySSF1182903.92E-28152219IPR003657WRKY domain
PROSITE profilePS5081129.367154219IPR003657WRKY domain
SMARTSM007745.0E-36159218IPR003657WRKY domain
PfamPF031062.6E-25160217IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MSGNIGDFNQ NFYSFPDQQP DFLNGSSTLS FERDSTVFSD DKSYLNRGEF ASVYDGLQSS  60
GYHLPEEILG FSNDATVEED FFVATLATTT AATTAAGGGG GGLYAPNSPM TASSSNDQLR  120
EKDCRDVNDA SKNVCGKMKK KVEKPPRIAF LTKSDYEQLE DGYRWRKYGQ KNVKNSPYPR  180
SYYRCTTRNC PVKKRVERMF ENPSTVMTTY EGQHIHQYPV TPALKGNSQV FSPPPPPQPS  240
SSLGFFKQQP SVMQRQIYSQ INGGLLQTNK TSTSTSLQQQ KQPLPSLDFS IDFGFLEDDL  300
GSRN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-241522201078Probable WRKY transcription factor 4
2ayd_A6e-24147219274WRKY transcription factor 1
2lex_A5e-241522201078Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NHB40.0A0A0K9NHB4_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18170.14e-37WRKY DNA-binding protein 28