PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma99g00410.1
Common NameZOSMA_99G00410
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family FAR1
Protein Properties Length: 510aa    MW: 57455.6 Da    PI: 7.3582
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma99g00410.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR146.51.2e-14237329390
             FAR1   3 YneYAkevGFsvrkskskks....krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                      Y ++A+ +GFsvr  ++k+     + ++  +++++ Csk+g+++   +  + +rr++ ++r+gC a++k k+ + +++w+ ++++ +HnH+++
  Zosma99g00410.1 237 YYDFASVTGFSVRLGSTKNVidneSGQKILVMKRLLCSKQGSPSLILQPINGNRRKNGVSRCGCLASIKFKRLDiSDNWVTDTVNFDHNHSFT 329
                      999***********999887776455666789**************99999***************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.6E-11237329IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MTSPPSFANQ DQPSILQVSP NTNFIFFTPP LYRSQQFSYD HTNTSCNVSL KFRFNSPQCQ  60
TNDNTLVSEE DFSTSSVPHV AASTIFESDF VRRTSAEIGE SSANMNYGTA KKPNSLNFQF  120
NSSDRHTNVN PTACSDNVST PLDPDVVCSI FFDSEFVQST PAEIIKSSAE ILSSSAILGC  180
GTAKTPDNYC KRKFSSLVHD HASPDHENAS SSHNQCNKPC PVVGQVFSSY ELVVQSYYDF  240
ASVTGFSVRL GSTKNVIDNE SGQKILVMKR LLCSKQGSPS LILQPINGNR RKNGVSRCGC  300
LASIKFKRLD ISDNWVTDTV NFDHNHSFTT PSKIRYLPIN RSISHTSKLL FSSLADVNVP  360
VSQQAAYFSN QLGGVQNMGC MKIDINNMVR DHRIDLKNYD VDLIVEEFEI KNLENNHFFY  420
DLVKDDQGRL KHLFWADPTM IENYKLFGDS VTFDTTNKTN VYSMVFRMFC GVNYHRKTTI  480
FGSAFLRYFF FTFLFKFLLS FTLYHLLLH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NJI40.0A0A0K9NJI4_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1424494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-30FAR1-related sequence 5