PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma99g00110.1
Common NameZOSMA_99G00110
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family HD-ZIP
Protein Properties Length: 301aa    MW: 33546.6 Da    PI: 7.8094
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma99g00110.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.31.1e-17118172256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      +k+ +++keq  +Lee F+k+++++ +++  L++ ++Lt rqV vWFqNrRa+ k
  Zosma99g00110.1 118 KKKLRLSKEQSSVLEESFKKHSTLNPKQKLALSSVVNLTPRQVEVWFQNRRARTK 172
                      778899***********************************************98 PP
2HD-ZIP_I/II115.82.5e-37118206190
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                      +kk+rlskeq+++LEesF+++++L+p++K +l++ ++l+prqv+vWFqnrRARtk+kq+E d+e+Lkr +++l+een+rL+ +v+eLr +
  Zosma99g00110.1 118 KKKLRLSKEQSSVLEESFKKHSTLNPKQKLALSSVVNLTPRQVEVWFQNRRARTKLKQTEWDCEYLKRYCEKLTEENRRLHIDVNELR-T 206
                      59*************************************************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046186.8E-103385IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.608.9E-18103173IPR009057Homeodomain-like
PROSITE profilePS5007116.455114174IPR001356Homeobox domain
SMARTSM003895.5E-16116178IPR001356Homeobox domain
SuperFamilySSF466895.56E-18117183IPR009057Homeodomain-like
PfamPF000465.1E-15118172IPR001356Homeobox domain
CDDcd000861.10E-14118175No hitNo description
PROSITE patternPS000270149172IPR017970Homeobox, conserved site
SMARTSM003401.6E-17174217IPR003106Leucine zipper, homeobox-associated
PfamPF021833.5E-8174206IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MDYDLQLSLG TKVLPLSFPE KRRWPESPDS MAPSTVKRTK SAVKGIDVNK LPTEDWDVAG  60
VEEEATISSP VSAVSSVSAE KRPPREETDE NDRGDCSGGE PTATSTASDD DEGENGSKKK  120
LRLSKEQSSV LEESFKKHST LNPKQKLALS SVVNLTPRQV EVWFQNRRAR TKLKQTEWDC  180
EYLKRYCEKL TEENRRLHID VNELRTLRLS QSPNLFAPPT TISICQLCQQ TSTGTINPQP  240
QEADAVKGER KSGNGIEWRC PAPPQKQPHV FFPHRPTAML AWSSTSTGSV VPFPDARSQR  300
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116122SKKKLRL
2166174RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022002260.11e-65homeobox-leucine zipper protein HAT4-like
SwissprotP466024e-58HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLA0A0K9NH400.0A0A0K9NH40_ZOSMR; Homeobox-leucine zipper protein HAT3
STRINGERN001842e-64(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38423376
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.17e-55homeobox protein 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]