PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma98g00100.1
Common NameZOSMA_98G00100
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 328aa    MW: 36605.9 Da    PI: 6.6477
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma98g00100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.61.9e-072192571154
                      HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       R +++ ++++ L++l+ +      +K + a++L +A+eYIk+L
  Zosma98g00100.1 219 VRKQKLSDRIAALQQLVSPF-----GKTDTASVLFEAIEYIKYL 257
                      6889***************8.....8*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.411208257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.09E-11218272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.08E-7218258No hitNo description
PfamPF000107.7E-5220257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-9222270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MAEHFHPGAL YSTRTTSTST VPTPAPAPVH VHGVTADHFI HDASFGFSSP TFDWNQATTM  60
TLQNDFVQDL SSNPYFCAKA PASYGSALLL PSNPLFEPNL KHGCSSSSES SDDTNQLPSW  120
FKFPQFFDTL SNQLHYFSDQ FSDSTAAYWN PPTVGSEEFI LPPLYNYFPG PNSWVPKPNR  180
IIKIPSVSDE VRSLNNYHPG PAIKKPRIET SSSLPIFKVR KQKLSDRIAA LQQLVSPFGK  240
TDTASVLFEA IEYIKYLHYE VDALSTQYMK NNTHKQDERK RDLLSRGLCL VPIATANIPI  300
STNQSNLDLS SHDLAASYRY TTEQMEK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NJE20.0A0A0K9NJE2_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29703464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.17e-33bHLH family protein