PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Zosma96g00520.1

Common Name

ZOSMA_96G00520

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

HB-other

Protein Properties

Length: 170aa MW: 19842.4 Da PI: 9.4881

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma96g00520.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.4	5.9e-19	43	98	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +r+ ++++++q++ Le+ F+ + +p+ ++r +L kkl+++ +qV++WFqN+R+k k Zosma96g00520.1 43 KRNYHRHSHDQIQNLEAIFKDCANPNVKQRVDLGKKLNMDSQQVRFWFQNKRTKVK 98 688999************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.31E-17	29	100	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.6E-19	38	108	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.629	40	100	IPR001356	Homeobox domain
SMART	SM00389	2.8E-15	42	104	IPR001356	Homeobox domain
Pfam	PF00046	2.0E-16	43	98	IPR001356	Homeobox domain
CDD	cd00086	3.78E-12	43	100	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence Send to blast
MMYSGSRLDD FDGQERRLSR EVDTNGNQNS IVQYDPMNSN EKKRNYHRHS HDQIQNLEAI 60 FKDCANPNVK QRVDLGKKLN MDSQQVRFWF QNKRTKVKNQ IKNKEISILR QQIEKLQHEK 120 MLLIMESMSK PCCSQCGYHP ANGKILQKDQ EFPTENDRSS QGCVSHSKP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9NHX7	1e-123	A0A0K9NHX7_ZOSMR; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61150.1	3e-33	homeodomain GLABROUS 1

Link Out ? help Back to Top
Phytozome	Zosma96g00520.1