PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma93g01000.1

Common Name

ZOSMA_93G01000

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

bHLH

Protein Properties

Length: 492aa MW: 53318.9 Da PI: 6.4503

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma93g01000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.4	5.9e-09	309	357	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq Zosma93g01000.1 309 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 357 58***********************9....556***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.56E-11	304	361	No hit	No description
SuperFamily	SSF47459	5.76E-17	304	375	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.485	306	356	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-16	307	373	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.3E-6	309	357	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.7E-10	312	362	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 492 aa Download sequence Send to blast
MDLREKDKFV LDRDSENHLN YNPSGISADW QMGCVPTSNS NNSISMGVGQ ATSCPSASMV 60 DSFSCSTLWD DHSSNSHNLG ISLNTTTNAS NNVHIIKPIP PPSRLDMGGW NPSDHISKDG 120 VFQQTSIGIL PPGGLSSQFP SDSTFIEQAA RLSCFGSGTF TSMLSPFDTS NSYFTQSRRS 180 DPNILEGHNR SNGEGSPMNS QKDTTSSQRV GEHGNTEFNG GGSGQEEIPL EKSVAKKRKR 240 NTQEIEIGQP MNDKPTEISK ENNGVGHKYE PNASSPLGAK NNGKQAKDGG DPAKEDYIHV 300 RARRGQATNS HSLAERVRRE KISERMKFLQ DLVPGCSKVT GKAVMLDEII NYVQSLQRQV 360 EFLSMKLATV NPQLDFNLEG FVSKDIRAGT SSAIGFTPDL AHHFLNPTSQ GGLTQSGVFG 420 VGPPSPDAFR RAINGQLNSP NTFKEAKHQM GISCDDDIQN ILSQMGFGNN LPLNIQQDSN 480 DKTRSSDGFT M*

Sequence ? help Back to Top

Protein Sequence Length: 492 aa Download sequence Send to blast

MDLREKDKFV LDRDSENHLN YNPSGISADW QMGCVPTSNS NNSISMGVGQ ATSCPSASMV  60
DSFSCSTLWD DHSSNSHNLG ISLNTTTNAS NNVHIIKPIP PPSRLDMGGW NPSDHISKDG  120
VFQQTSIGIL PPGGLSSQFP SDSTFIEQAA RLSCFGSGTF TSMLSPFDTS NSYFTQSRRS  180
DPNILEGHNR SNGEGSPMNS QKDTTSSQRV GEHGNTEFNG GGSGQEEIPL EKSVAKKRKR  240
NTQEIEIGQP MNDKPTEISK ENNGVGHKYE PNASSPLGAK NNGKQAKDGG DPAKEDYIHV  300
RARRGQATNS HSLAERVRRE KISERMKFLQ DLVPGCSKVT GKAVMLDEII NYVQSLQRQV  360
EFLSMKLATV NPQLDFNLEG FVSKDIRAGT SSAIGFTPDL AHHFLNPTSQ GGLTQSGVFG  420
VGPPSPDAFR RAINGQLNSP NTFKEAKHQM GISCDDDIQN ILSQMGFGNN LPLNIQQDSN  480
DKTRSSDGFT M*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010943352.1	1e-137	transcription factor bHLH49 isoform X1
Refseq	XP_029116539.1	1e-137	transcription factor bHLH49 isoform X1
TrEMBL	A0A0K9NIR2	0.0	A0A0K9NIR2_ZOSMR; Transcription factor bHLH49
STRING	XP_008788970.1	1e-136	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2909	37	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	1e-84	bHLH family protein

Link Out ? help Back to Top
Phytozome	Zosma93g01000.1