PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma92g00180.1
Common NameZOSMA_92G00180
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 389aa    MW: 42962.9 Da    PI: 4.5485
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma92g00180.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.82.9e-113143541055
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      r+RR+riN+++  L+ l+P+      +K++ +++Le+AveY+k Lq
  Zosma92g00180.1 314 RKRRERINERLKILQNLIPNG-----TKVDISTMLEEAVEYVKFLQ 354
                      9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.307304353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-14304368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-13309367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-12310359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.08E-12313358No hitNo description
PfamPF000101.3E-8314354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MDSVVEGGGS DSNWTTHFST TEDPEIMALL YDNTPFSYEL HHHNQEQEQQ QQQQQHGESM  60
ELPLSMYLDI SDHDYYAQDT KYSNDCNSTI TGWSQGCGSN TVGAPMSSSS FHFGDEPLTL  120
NPQYHNQHDI ESYYLTEAVS SELTNGNPIP MELFTMEPDQ NNNNGANFLN SPAAYLLKDS  180
SFTETEAAKN DLGEDSGQKP ASKRGHPDPE PKKTSKNATP KKKSKANGKT VRSKKDQKSN  240
TSCVDNPEEC NAADMNSTAV QTSLTSSSED DSSSVQLENN DAVSEENSVT KGGARSKTRA  300
GRGSATDPQS LYARKRRERI NERLKILQNL IPNGTKVDIS TMLEEAVEYV KFLQLQIKLL  360
SSDDKWMYAP IAYNGMDIGL DLKISPPE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022762371.11e-64transcription factor bHLH84-like
TrEMBLA0A0K9NL310.0A0A0K9NL31_ZOSMR; Uncharacterized protein
STRINGERN109243e-60(Amborella trichopoda)
STRINGAquca_017_00066.13e-60(Aquilegia coerulea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43103270
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.15e-53bHLH family protein