PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma91g00340.1
Common NameZOSMA_91G00340
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family CO-like
Protein Properties Length: 367aa    MW: 42324.2 Da    PI: 7.7404
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma91g00340.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box26.51.3e-081553440
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg..Htvv 40
                     r C+++  k++++fC  ++++lC++C  + H++  H+++
  Zosma91g00340.1 15 RACDNCLLKRAHWFCAADNVFLCQSCDKSVHSSpkHRHE 53
                     68*****************************77996554 PP
2CCT65.51.5e-22317360144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      Rea+++RY++Kr++R+F KkirYe+RK +Ae+RpR+KGrFvk++
  Zosma91g00340.1 317 REAKVSRYRQKRRKRLFAKKIRYEVRKLNAEKRPRIKGRFVKRS 360
                      9****************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.8121257IPR000315B-box-type zinc finger
SMARTSM003364.2E-41255IPR000315B-box-type zinc finger
CDDcd000217.06E-71556No hitNo description
PfamPF006432.2E-71552IPR000315B-box-type zinc finger
PfamPF062034.2E-17317359IPR010402CCT domain
PROSITE profilePS5101715.795317359IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MSNDTAATIG ARMARACDNC LLKRAHWFCA ADNVFLCQSC DKSVHSSPKH RHERVRRLKS  60
SMSFLIPKPL IRDQDGSTGP TWQHAITRKA RTPRTRNKGG GDGEEMQRKI CPVVPDLDVC  120
EEAEDLIFRV PVFNPVLHDQ PFSHLHQEQD GMYDLKLAST IPITKRFIDK DEEGLMSDLD  180
VADFDMDMDR LFGYEPQSVY YHMGDWENNC SDEAIASMSA FMESSGSVKE EELEETLVAK  240
NNNTDMMLKL DYNAIIHDWS TQCLSSPWMS GTRSSVSEQE NMELKACIEQ GDVKMKTVKE  300
EEQQHTFTVL KYTDFHREAK VSRYRQKRRK RLFAKKIRYE VRKLNAEKRP RIKGRFVKRS  360
LTNLIL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1328343RKRLFAKKIRYEVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NJH10.0A0A0K9NJH1_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100042228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73870.13e-42B-box type zinc finger protein with CCT domain