PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma90g00300.1
Common NameZOSMA_90G00300
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family WRKY
Protein Properties Length: 312aa    MW: 34824.3 Da    PI: 8.4446
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma90g00300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY88.45.9e-28166225159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      ++Dgy+WrKYGqK+ + ++ p++YY+C++a  Cpvkkkv++s ed ++++ tYegeHnh+
  Zosma90g00300.1 166 VKDGYQWRKYGQKVTRANPSPKAYYKCSHApICPVKKKVQKSLEDRSLLIATYEGEHNHP 225
                      58***************************99****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081125.775161227IPR003657WRKY domain
SuperFamilySSF1182901.22E-23163227IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-27163227IPR003657WRKY domain
SMARTSM007745.9E-31166226IPR003657WRKY domain
PfamPF031063.4E-23167225IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0009611Biological Processresponse to wounding
GO:0009751Biological Processresponse to salicylic acid
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050691Biological Processregulation of defense response to virus by host
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MESRWSDEQS SISLDLNIGP ANNPNHSPEL TTEAERKFNN ITKDGSLREE AAEQLESDLH  60
RMTMENIRLN EMLRNITKSY QVLRIQASDM MRTGSSYGYL AGVGRSDSTS SSSPPLRKRK  120
AEEMLMMNPL PDYYTDSTSD GRRATSTVKI SNTCVKIDPL DSSLVVKDGY QWRKYGQKVT  180
RANPSPKAYY KCSHAPICPV KKKVQKSLED RSLLIATYEG EHNHPHPCQN EVYPGNSSAG  240
VIIEDPINMI KRVGEVQVCS PEVDHPSFES PKFKQLVVDQ MASSLSKDPN FASALATAIS  300
GRIQRIPTIR R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-191652271374WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00251DAPTransfer from AT1G80840Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NJB30.0A0A0K9NJB3_ZOSMR; WRKY transcription factor 5
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP182238103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.15e-53WRKY DNA-binding protein 40