PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma8g01850.1
Common NameZOSMA_8G01850
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 499aa    MW: 55518.7 Da    PI: 4.9227
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma8g01850.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.92.8e-11235278755
                     HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     ++ErrRR+++N+++  Lr+l+P+ +      K++ a+iL  A+e++++Lq
  Zosma8g01850.1 235 MAERRRRKKLNDRLYVLRSLVPNiS------KMDRASILGDAIEFVNKLQ 278
                     79*********************66......*****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.0E-844131IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474591.44E-17226291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.339228277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-16234283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.8E-9235278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-16235291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.04E-13235282No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MQFLGCCCGG VENYDDVGGG GGEQLFPVLL PSNIPTCRDS KFGHARTVAC DSLAQLPNSI  60
NLELNSGIYA QVLMSNQSRW IFLSNTVDSP NILGETVSAT QVLIPVTGGL VELFAAKHIP  120
EDHRVIDFIT SMQYSNLNID NPHEETTSVS YWDQTVDQLR VSVDPPLNLF GQPRYNKEGG  180
LIFEAESMDV NDKGSGEMAR RAESVASDGS NPGDDEDDNK MRGGGKKHQS CKNLMAERRR  240
RKKLNDRLYV LRSLVPNISK MDRASILGDA IEFVNKLQHQ VKELQEELEK TTSSEDEEGG  300
KQTNGNVEDD EIQNHTNSNS NSNILNHQAV LAVLKEQSVI NKHTKGVVEQ DQDHDGDPNS  360
KKTRTELDGS GGAKQGHRAH SSDENGEPPM EVQVEVFQVS RNGFFLKVFC QYKAGGFVKL  420
MEDLNSLGFE VTNANVTTFT KLVLNVLKIE KRDSEAVEAS QLRESLLDRM RPENTEWRDS  480
EYYNTVMDSH PLHYLHHH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-132362811257Transcription factor MYC2
5gnj_B1e-132362811257Transcription factor MYC2
5gnj_E1e-132362811257Transcription factor MYC2
5gnj_F1e-132362811257Transcription factor MYC2
5gnj_G1e-132362811257Transcription factor MYC2
5gnj_I1e-132362811257Transcription factor MYC2
5gnj_M1e-132362811257Transcription factor MYC2
5gnj_N1e-132362811257Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1236243ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NJU20.0A0A0K9NJU2_ZOSMR; Basic helix-loop-helix (BHLH) Transcription Factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55303449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.19e-86bHLH family protein