PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma8g01510.1
Common NameZOSMA_8G01510
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C2H2
Protein Properties Length: 450aa    MW: 49954.6 Da    PI: 9.6283
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma8g01510.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.88.9e-06180202223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +Cp Cg++F+ +++L +H+ + H
  Zosma8g01510.1 180 SCPECGEVFTKPESLDHHQIVrH 202
                     8******************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280179202IPR007087Zinc finger, C2H2
PROSITE profilePS501579.328179207IPR007087Zinc finger, C2H2
SuperFamilySSF563992.01E-17204260No hitNo description
Gene3DG3DSA:3.90.228.104.6E-11206446IPR012317Poly(ADP-ribose) polymerase, catalytic domain
SuperFamilySSF563992.01E-17294446No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MALATLVPTT TDHSSRHYRR KHHHHHGNKN KPPRFVLDAE EDEEEVRRRR KMARKRKKLQ  60
PVVLQTSPTS SWAQFKNLIT CRTTADPSQI RSTPSGRLGS TCSKICAMKE VARNNTRIVH  120
RGDHDHSPTS KEAVVLKPRS WVGGSHLSSK GLQLRKLTGC YECHSVTQPI RYPTPRTLCS  180
CPECGEVFTK PESLDHHQIV RHAVSELGPE DSGRKIVEII FDSSWSKKEK TMVTFDRPIL  240
YCKIERILKV HNTQRTISRF EDYRDAIKSR AATHFLHTTT TTGDGNSNSK KKNPRCAVDG  300
NELLRFYSTT LTCSLGAHGS TSLCSDYSST PACGVCSVIR YGFGRVKQEG GGKGVRTTAS  360
SRRAHECFSP PTVEEDERRM VMLVCRVIAG RVRRVGDTFD ESGVGVGGGG YDSVAGKDCE  420
GSSGNLEELV VTNPRAILPC FVVIYNTSD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14657RRRRKMARKRKK
24658RRRRKMARKRKKL
35357RKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010268701.11e-124PREDICTED: uncharacterized protein LOC104605577
TrEMBLA0A0K9NLN00.0A0A0K9NLN0_ZOSMR; C2H2-like zinc finger protein
STRINGXP_010268701.11e-123(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124312731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-107C2H2-like zinc finger protein