PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma8g00120.1
Common NameZOSMA_8G00120
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family WRKY
Protein Properties Length: 354aa    MW: 39415.2 Da    PI: 9.673
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma8g00120.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.22.6e-31147203360
                     -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     DgynWrKYGqK+v+gse+prsYY+Ct+++C++kkkvers  d+k+ ei+Y+geHnh+k
  Zosma8g00120.1 147 DGYNWRKYGQKQVRGSEYPRSYYKCTQSNCMMKKKVERSV-DGKIAEIVYSGEHNHPK 203
                     9***************************************.***************85 PP
2WRKY104.94.2e-33280336359
                     -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     Dg++WrKYGqK+vkg++fprsYYrCt ++C+v+k+vers+++p+ v++tYeg+Hnh 
  Zosma8g00120.1 280 DGFRWRKYGQKVVKGNPFPRSYYRCTNTDCNVRKHVERSSDNPSSVVTTYEGKHNHA 336
                     9*******************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081124.202140204IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.4E-27142204IPR003657WRKY domain
SuperFamilySSF1182902.75E-24144204IPR003657WRKY domain
SMARTSM007742.1E-33145203IPR003657WRKY domain
PfamPF031063.0E-24147202IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.9E-31272336IPR003657WRKY domain
PROSITE profilePS5081131.02273338IPR003657WRKY domain
SuperFamilySSF1182901.15E-27274336IPR003657WRKY domain
SMARTSM007742.5E-38278337IPR003657WRKY domain
PfamPF031063.0E-26280335IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010214Biological Processseed coat development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MEGQKVEDEI VVVKPVASRP YSNFRLFSAA SDAVVAPQSD DTINTIPKTL VKIRQPLSNC  60
SQLVQVSDDV SDNTEIWCST DDTGIGSQSS WVIHKPVAKH VSRPSLTFGS ENFNTCIQLP  120
NRVPGMAVAT KISISRVNSG GDRVSYDGYN WRKYGQKQVR GSEYPRSYYK CTQSNCMMKK  180
KVERSVDGKI AEIVYSGEHN HPKPQPPKNL RVSAPSTSLG KEAEVAAITD NNKKKNSELR  240
FDHQDQQPLC KQRRIEETPA GIINSVGMQK PTLESDASGD GFRWRKYGQK VVKGNPFPRS  300
YYRCTNTDCN VRKHVERSSD NPSSVVTTYE GKHNHAPTVN RVPYAPDSFS KLK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-28147335177Probable WRKY transcription factor 4
2lex_A6e-28147335177Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024987644.15e-77WRKY transcription factor 44
RefseqXP_024987652.15e-77WRKY transcription factor 44
TrEMBLA0A0K9NLB40.0A0A0K9NLB4_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23252941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.12e-64WRKY family protein