PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma8g00040.1

Common Name

ZOSMA_8G00040

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

Dof

Protein Properties

Length: 330aa MW: 35527.4 Da PI: 6.4976

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma8g00040.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.9	2.3e-38	42	99	4	61
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 k+lkcprC+s ntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rknk+ Zosma8g00040.1 42 KSLKCPRCESVNTKFCYYNNYSLSQPRYFCKGCRRYWTQGGSLRNVPVGGGCRKNKRC 99 679****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-27	30	98	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.8E-32	43	98	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.311	44	98	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	46	82	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MVVQSRNHEE DEQGGGELVF MSQIKQDSLH QEKKPKPLPD GKSLKCPRCE SVNTKFCYYN 60 NYSLSQPRYF CKGCRRYWTQ GGSLRNVPVG GGCRKNKRCS PSSSTTTAST TTTTCTTLVA 120 AAAAAAAANA CHNNNAGQFL HQHQLTYEYD PSDLSLAFGR LHAPINPPPL VSLSTTPHYE 180 SGPFVIDSNC NSGQIIHHSP EVPGFLDILR GGFFDANPIA ASGHTNFFYG LGGNLEGEEE 240 NLPFFPIGGE ISNESPQMMK HESPCKSDDG GSFGDRRVDG VQQNWQVGGV DGTTNMMMAG 300 LDSGRDYYWS SGGVGGGGVW HGLVNSSLM*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9NJB7	0.0	A0A0K9NJB7_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4704	32	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	1e-33	TARGET OF MONOPTEROS 6

Link Out ? help Back to Top
Phytozome	Zosma8g00040.1