PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma89g00630.1
Common NameZOSMA_89G00630
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 725aa    MW: 81277.2 Da    PI: 4.6781
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma89g00630.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.87.1e-12543585754
                      HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++ErrRR+++N+++ +Lr+++Pk      +K++ a+iL  A+ Y+k+L
  Zosma89g00630.1 543 MAERRRRKKLNDRLYKLRSVVPKI-----TKMDRASILSDAIAYLKEL 585
                      79*********************7.....7****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5177421.615192IPR011684Protein Networked (NET), actin-binding (NAB) domain
PfamPF077654.8E-181584IPR011684Protein Networked (NET), actin-binding (NAB) domain
PROSITE profilePS5088815.79536585IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-16539601IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-9542585IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-14542591IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.6E-15543596IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.14E-12543590No hitNo description
PROSITE profilePS516718.673649724IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0003779Molecular Functionactin binding
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 725 aa     Download sequence    Send to blast
MGNISHCNDK ISCSWCLATH NQNQWLHSTL SELEKSTKKM LTLLNLEDGG DTFAQRAEMY  60
YQNIPELVKN VEDYRRWYYL LAEHCSNLSI RTLMHSRSLD IMSLTTTDNN KSSDSSNNSN  120
QLSTTELSGN VEFMMTESAR KNEGKSEAKR EIVAEVERLM EENNGLKDQL REIMFENAAL  180
TQAKHESDKE SGGETVAMLM NKSDAAAKIS GSGMILINIK TLSTFHTIPL PTACSMINSG  240
EFPILTIIQR QRLGIQRMNS DNTGWFQNVY WSGVDIDQNG SLNTFFAPDN QVQNADFMAL  300
LQDEHQYYPT EASTIEGSAA AIFPQDHSFT DIGHIQSYQG MIDGTTIFPQ TEVDLSTQPV  360
FGQIQNTQGI EEATIFPCQT LQEGFEDHSF SCPASSVFNV KKNTDSFVSS LVDPNYNCFG  420
YDPSDCLIEN PLLQSPVFLN NNWNDGDVGE LICKPQLEEL EPPQLEEFTR NCNSTAELVE  480
KSETLLWLER NDSMLEDELN GLELNYDVKE MFDFKMEENA VNGGEQRQIL MKTDSKLPAK  540
NLMAERRRRK KLNDRLYKLR SVVPKITKMD RASILSDAIA YLKELHERIQ GLENEIGSSP  600
LNSPSIVPGL TSQTNDFKLP TIRSKRSASN YNPKQSSVEV RVGKGDAVNI HMHSVQKPGL  660
LAATMQTIDN MGLDVQQAAI SCLNGFTLDI FRAEQSKKDG TAVRSDDIKT SLLKSTSDAL  720
KKFD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1544551ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NMC20.0A0A0K9NMC2_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP164637101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12860.14e-54bHLH family protein