PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma88g00150.1
Common NameZOSMA_88G00150
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family WRKY
Protein Properties Length: 325aa    MW: 36259.8 Da    PI: 6.681
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma88g00150.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.69.7e-32125181258
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                      dDgy+WrKYGqK++k+s++prsYYrCt ++C++k++vers edp+v+++tYeg H h
  Zosma88g00150.1 125 DDGYKWRKYGQKSIKNSPNPRSYYRCTNPRCNAKRQVERSLEDPDVLVVTYEGLHLH 181
                      8******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081127.221119184IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.6E-29121182IPR003657WRKY domain
SuperFamilySSF1182901.7E-26122182IPR003657WRKY domain
SMARTSM007744.3E-36124183IPR003657WRKY domain
PfamPF031066.3E-25125181IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MLTHGMEEDI VRELLDNQSP FFLVPKSDAP SPQLEKVSSR ETVINKLISK VYSGPTLGDI  60
ESALGSTTAT TTFKRRGADA HAFTMDQNTP SLLNSILSPE KGYNKNKLEN KYTLRVKSGG  120
NGITDDGYKW RKYGQKSIKN SPNPRSYYRC TNPRCNAKRQ VERSLEDPDV LVVTYEGLHL  180
HYSYPQFFLS RLPQLPPQKT ISPLAGSPLK KLKTQIMEDP LASNTISPVK NWIQEDAQEE  240
EEEEEEMIRP AIVPRREETR SNAHQQGLLE DIVPKLVRNP AFYDELTSVT CSPSSPPSSS  300
SSSSCLSWSS LPSFFDAGTL FANI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-211231811371WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008777314.16e-78probable WRKY transcription factor 49
TrEMBLA0A0K9NKA40.0A0A0K9NKA4_ZOSMR; Uncharacterized protein
STRINGXP_008777314.12e-77(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75253551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.12e-44WRKY DNA-binding protein 49