PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma87g00390.1

Common Name

ZOSMA_87G00390

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

bHLH

Protein Properties

Length: 428aa MW: 46835.3 Da PI: 7.1308

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma87g00390.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.4	0.0006	330	361	18	54
HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++ L++++ + +K + a++L +A++YIk L Zosma87g00390.1 330 EKITALQQIVSPF-----GKTDTASVLMEAINYIKFL 361 5777888888887.....8****************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.074	312	361	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.4E-9	327	372	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.1E-8	327	371	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.65E-4	330	366	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence Send to blast
MARQVSQSSV ASTHTNSNLN WWDIHANPTS SWNSWQHQKL MDTNPPHSVT IDGGSDSFPN 60 VPNNSGAGDP TASLLWNHVL LNGGDVHKHQ GDENFNLLET LSSKNLAPDM FEPACDYLKK 120 LDESWELAAP PVPFPTTTTT ATNLTDLVSN WSIAPPQPGF DYHHLHGSAT TTSDLFGEHI 180 ELQNSSSPYS SCSYSGQNVD SVASENAGML SLTYGDDIHH IGDRYSAASD ASRSNTRNFT 240 DLINFGGLMR NTTTKQLVTV DQLNSPSTHT ITKQGKEIGE GNVKGKMKKN KKKRSDKSSD 300 GVLKKCKHET MASSNLSSAK IQIPKVKLGE KITALQQIVS PFGKTDTASV LMEAINYIKF 360 LHEQVQLLSQ DPFMKPGSAK NVEIKLGLGN RGLCLVPISS TLQIHRENDK LNGPDCWTPN 420 YRGFLYR*

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence Send to blast

MARQVSQSSV ASTHTNSNLN WWDIHANPTS SWNSWQHQKL MDTNPPHSVT IDGGSDSFPN  60
VPNNSGAGDP TASLLWNHVL LNGGDVHKHQ GDENFNLLET LSSKNLAPDM FEPACDYLKK  120
LDESWELAAP PVPFPTTTTT ATNLTDLVSN WSIAPPQPGF DYHHLHGSAT TTSDLFGEHI  180
ELQNSSSPYS SCSYSGQNVD SVASENAGML SLTYGDDIHH IGDRYSAASD ASRSNTRNFT  240
DLINFGGLMR NTTTKQLVTV DQLNSPSTHT ITKQGKEIGE GNVKGKMKKN KKKRSDKSSD  300
GVLKKCKHET MASSNLSSAK IQIPKVKLGE KITALQQIVS PFGKTDTASV LMEAINYIKF  360
LHEQVQLLSQ DPFMKPGSAK NVEIKLGLGN RGLCLVPISS TLQIHRENDK LNGPDCWTPN  420
YRGFLYR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9NKJ8	0.0	A0A0K9NKJ8_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7169	7	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31050.1	2e-29	bHLH family protein

Link Out ? help Back to Top
Phytozome	Zosma87g00390.1