PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma86g00620.1
Common NameZOSMA_86G00620
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family FAR1
Protein Properties Length: 304aa    MW: 34123.6 Da    PI: 8.9313
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma86g00620.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR141.35e-13107199390
             FAR1   3 YneYAkevGFsvrkskskks....krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                      Y ++A+ +GFsvr  ++k+       ++  + +++ Csk+g++      t+ +rr++ ++++gC a++k k+   +++w+ ++++ +HnH+++
  Zosma86g00620.1 107 YYDFASFIGFSVRLGSTKNIldkeIGQKILVIKRLLCSKQGSPILILPPTNGTRRKNGVSKCGCLASIKFKRIGrSDNWVTDSVNFDHNHTFT 199
                      999***********99887665423344566799*********999999999********************999***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.2E-10107199IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MIYGTAKIPN SMNYQFNSPH CQTNVNPIAS NVNVSTSLDP DIVHNTFFDS EYVQSASADI  60
RESSAQIRAN SANVSSGTAK TPDIHFKRKS SSPGEVFPSY ENTVQSYYDF ASFIGFSVRL  120
GSTKNILDKE IGQKILVIKR LLCSKQGSPI LILPPTNGTR RKNGVSKCGC LASIKFKRIG  180
RSDNWVTDSV NFDHNHTFTT PSKIRYLPIN RSISHTSKLL FSSLAEVNVP VSQQAAYFSN  240
QLGGPQNMGC MTLNINNMVR DDHIDLKNYD VYLIVEEFEM KKLENRDFFY DLVKDDCRLK  300
HFF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2562148e-93AC256214.1 Zostera marina clone XTP02-B06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NKX50.0A0A0K9NKX5_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1424494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.11e-11FAR1-related sequence 11