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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma86g00080.1 | ||||||||
Common Name | ZOSMA_86G00080 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | bHLH | ||||||||
Protein Properties | Length: 254aa MW: 28583.3 Da PI: 4.3156 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.1 | 2.1e-10 | 75 | 112 | 13 | 55 |
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R+++N+++ Lr+++P+ +K++K++iL+ A+ YI++Lq Zosma86g00080.1 75 RRNLNQRLYSLRSVVPNI-----TKMNKSSILTDAIAYIQELQ 112 789**************7.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.798 | 62 | 111 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-9 | 70 | 117 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.73E-9 | 75 | 116 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.4E-13 | 75 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.9E-8 | 75 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.71E-13 | 75 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MDENMDEYNL YWETKMFLEV EELYGWGLES VLAECSSSGL IESQEEGLNS AAAFSSSSKS 60 FSSAKPNNKM IVENRRNLNQ RLYSLRSVVP NITKMNKSSI LTDAIAYIQE LQEQERSLME 120 ETSQLGNMED PTDHESCQTT NHDKVEYDED MLRIKDKARC AADNIQVKVS GVGETTLVIS 180 ITCSKKKDMI LKLCQVLPSL NLKIITANII SFSGELFHTI IIEGDEVDAR WLEEKIEMSF 240 AEADKIQPCL LQG* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9NKS0 | 0.0 | A0A0K9NKS0_ZOSMR; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1044 | 38 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57150.1 | 8e-43 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma86g00080.1 |