PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma85g00920.1 | ||||||||
Common Name | ZOSMA_85G00920 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | LBD | ||||||||
Protein Properties | Length: 238aa MW: 24687.7 Da PI: 6.9311 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 129.9 | 1.1e-40 | 26 | 126 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v +i++lqqq+++l+ae Zosma85g00920.1 26 PCGACKFLRRKCVTGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLVHIPAHKRLDAVVTICYEAQARLRDPVYGCVVHIFALQQQVMNLQAE 119 7***********************9989****************************************************************** PP DUF260 94 lallkee 100 l++l+++ Zosma85g00920.1 120 LSYLQAH 126 **99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.027 | 25 | 127 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.6E-39 | 26 | 124 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MSASVSSGGG GGGSTGGGGS GGGGGPCGAC KFLRRKCVTG CIFAPYFDSE QGAAHFAAVH 60 KVFGASNVSK LLVHIPAHKR LDAVVTICYE AQARLRDPVY GCVVHIFALQ QQVMNLQAEL 120 SYLQAHLATL ELPSPPPPPP SHQPFSISDL PSSAATLPTS FDLSTLFLDP QTDQQQQQSP 180 WPPLPLQQQH QQMQMETGGS SSGSGGGEGD LQALARELVD RTRAAAGNLQ QPPTSSK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-38 | 22 | 127 | 7 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-38 | 22 | 127 | 7 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 6 | 19 | SGGGGGGSTGGGGS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes (PubMed:19088331). Functions in the initiation and emergence of lateral roots, in conjunction with LBD16, downstream of ARF7 and ARF19 (PubMed:19717544, PubMed:23749813). Transcriptional activator that directly regulates EXPA14, a gene encoding a cell wall-loosening factor that promotes lateral root emergence. Activates EXPA14 by directly binding to a specific region of its promoter (PubMed:22974309). Transcriptional activator that directly regulates EXPA17, a gene encoding a cell wall-loosening factor that promotes lateral root emergence (PubMed:23872272). Acts downstream of the auxin influx carriers AUX1 and LAX1 in the regulation of lateral root initiation and development (PubMed:26059335). {ECO:0000269|PubMed:19088331, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:22974309, ECO:0000269|PubMed:23749813, ECO:0000269|PubMed:23872272, ECO:0000269|PubMed:26059335}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:23749813}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009400358.1 | 1e-89 | PREDICTED: LOB domain-containing protein 18-like | ||||
Swissprot | O22131 | 5e-71 | LBD18_ARATH; LOB domain-containing protein 18 | ||||
TrEMBL | A0A0K9NL71 | 1e-170 | A0A0K9NL71_ZOSMR; Putative LOB domain protein 18 | ||||
STRING | GSMUA_Achr5P11330_001 | 5e-89 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3346 | 37 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45420.1 | 1e-69 | LOB domain-containing protein 18 |
Link Out ? help Back to Top | |
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Phytozome | Zosma85g00920.1 |
Publications ? help Back to Top | |||
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