PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma85g00610.1
Common NameZOSMA_85G00610
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family GRAS
Protein Properties Length: 809aa    MW: 88392.4 Da    PI: 6.4589
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma85g00610.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS320.72.9e-984308061374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.....sseelaalklfsevsP 89 
                      lv++L+++Ae v++g+  + +++Larl+++ sp+g+p+ R a+yf+eAL+  + +  + +++  p+s+ts+ +      + +l+a+k fse+sP
  Zosma85g00610.1 430 LVDQLFKAAELVETGNSVNSREILARLNHQLSPHGKPLIRSAFYFKEALNGIIEQ--TPVASPPPSSSTSPPQltpldLVLKLNAYKNFSEISP 521
                      6899***********************************************9998..44444444444433334555599999*********** PP

             GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefn 179
                      +++f+++t+ qa+le+++g +r+Hi+Dfdi+ G+QW +++q+L++R+    ++  sl+iT+++ p+s+s+ el  t+e+L++fA e g+pfefn
  Zosma85g00610.1 522 VVQFTNFTCIQALLEELSGFDRIHIVDFDIGVGGQWSSFMQELSQRQpkqqQQNSSLKITALVTPSSHSHLELMLTRENLTNFAMEHGIPFEFN 615
                      **********************************************988766678*************************************** PP

             GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsle 272
                      +l  + ++  ++ +L  +p Ea+aVn+ +         ++++s + ++L+++k+lsPk+vv v++++d+ n+ +F ++fl+al+ y+ l++s++
  Zosma85g00610.1 616 ILSLDVFDPATILAL-SSPSEAIAVNIPIG--------GPSPSWTATTLHFIKQLSPKIVVSVDHNCDRsNDLPFSQHFLNALHSYTILLESID 700
                      *95555555555444.466*********93........3445566799*********************************************6 PP

             GRAS 273 aklpres.eerikvErellgreivnvvacegaerrerhet...lekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
                      a  +  s e  +k+E+ l++ +i+nvv+ + ++r++++ +   +  Wr ++ +aGF+p++ls+++++qa+++l++++++g++ve+++ slvl W
  Zosma85g00610.1 701 AATAGSSpEVSSKIEKYLIQSRIENVVSSSCRRRVQQEMKksmMVPWRTMFASAGFGPIQLSNFTETQAECVLKRIQVRGFHVEKRQSSLVLFW 794
                      6666666599******************999998776544111558************************************************ PP

             GRAS 363 kdrpLvsvSaWr 374
                      +  +LvsvSaW+
  Zosma85g00610.1 795 QLSELVSVSAWK 806
                      ***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.426404786IPR005202Transcription factor GRAS
PfamPF035141.0E-95430806IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 809 aa     Download sequence    Send to blast
MRGKPFVEEG EGVVNRDRAK EGQGGEPRSV LDQRRSPSPP TSTSTLSSSL GGGGGSTDTA  60
GVAAVSETPL PQKWVPSETT SAAMGVEGEG RREDWMSELQ LQNIPMEIGL MGGSGGGGGG  120
GGKCETGADD WESMFSETPA AALGQDQSFM RWFVGDEEDS SSTGFKQHQQ LHHNHRMPSS  180
LIPASLSDDF DAGAAGGFGL IDQGFPFDPI EGFVGAPLTA ASTSVTTAGG FPIIPISTPT  240
TLNNVKNPFL AVANSNPLFQ SPVTAANSFP FQPQPPSQPV GPAMFFSENM EETNTPLFPP  300
NHILNHHQQT HGSHNPSFFM PLNLYAQQEP HHHNNHQPSA MAHQQQLHHQ HQLLHPKRHQ  360
SMVADPCGQI GPKPPFSISG QDHFLRRQQQ QAPPSFGSYH QRLMKPKLTR DELPAVAAHQ  420
QNQLQQHQSL VDQLFKAAEL VETGNSVNSR EILARLNHQL SPHGKPLIRS AFYFKEALNG  480
IIEQTPVASP PPSSSTSPPQ LTPLDLVLKL NAYKNFSEIS PVVQFTNFTC IQALLEELSG  540
FDRIHIVDFD IGVGGQWSSF MQELSQRQPK QQQQNSSLKI TALVTPSSHS HLELMLTREN  600
LTNFAMEHGI PFEFNILSLD VFDPATILAL SSPSEAIAVN IPIGGPSPSW TATTLHFIKQ  660
LSPKIVVSVD HNCDRSNDLP FSQHFLNALH SYTILLESID AATAGSSPEV SSKIEKYLIQ  720
SRIENVVSSS CRRRVQQEMK KSMMVPWRTM FASAGFGPIQ LSNFTETQAE CVLKRIQVRG  780
FHVEKRQSSL VLFWQLSELV SVSAWKCC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-3145380626375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NLJ80.0A0A0K9NLJ8_ZOSMR; Uncharacterized protein
STRINGXP_010258971.10.0(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20203796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-94GRAS family protein