PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma84g00360.1
Common NameZOSMA_84G00360
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family WRKY
Protein Properties Length: 449aa    MW: 48868.6 Da    PI: 7.1615
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma84g00360.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.63.4e-30225284159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+
  Zosma84g00360.1 225 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVAqGCPVRKQVQRCFEDMSILITTYEGTHNHP 284
                      58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.6E-32210286IPR003657WRKY domain
SuperFamilySSF1182902.09E-27219286IPR003657WRKY domain
PROSITE profilePS5081128.943220286IPR003657WRKY domain
SMARTSM007742.2E-37225285IPR003657WRKY domain
PfamPF031066.5E-27226284IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MVDLPVVAGG RMGMPEIDLS LNLDHGHGVT KMGDDAAVSE GACRKDEKKP QLQHESTMIS  60
DELSVLLMEL NEMKEENKHL RRSVEKTTEE YHQLQMRYDA IQHQFRNCSL ALGSCGGGLI  120
DKNLTEYSTV SGNVTDGGGH GQIPNWLGNY QSDNRLGLSL KLQTRSDKAS SELELERNFK  180
PVGNNNHICE PEIAAELAGI ATQSINPTNR KTRVSVRARC QGPTMNDGCQ WRKYGQKIAK  240
GNPCPRAYYR CTVAQGCPVR KQVQRCFEDM SILITTYEGT HNHPLPVGAT AMASTTTASS  300
QYTLLSDGTA CSQSTSLPLD ETAAYIGSFV AAPQKPIQYH NTNLNLYNLQ GQAQGRTNPI  360
HSSDVVTYDQ MNHFAALPSS YARILDRTAG TSNAHSWMEP STRSTQSLSD NVNAIASDPT  420
FKVAVAAAVS SLISKDRQNR TVNGSSGN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-21212288176WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NLY80.0A0A0K9NLY8_ZOSMR; Putative WRKY transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80223446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.12e-51WRKY DNA-binding protein 9