PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma84g00020.1
Common NameZOSMA_84G00020
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family Trihelix
Protein Properties Length: 436aa    MW: 49504.6 Da    PI: 4.4541
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma84g00020.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix39.71.2e-12164249186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergf.erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      +W+++ + +L++a   +  + +r++ +   W ev+kk+ e+ +  r+  qC+++++ l+k+ykk+  + ++ t +s+s+++yf+++e
  Zosma84g00020.1 164 EWMEDSTFVLLDAWGTLYLQNGRKSIRSDEWTEVAKKVNETSItPRTEAQCRNRLDTLKKKYKKEMLRIEE-TMNSTSNWVYFKKME 249
                      5*************************************9988868*******************9999888.688889********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.3E-17164251No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MDDTDDDARY PPNPYHQNNN SRSQFPSSNR PKITIRATAA ASSPQIDRSS RYSKEELEED  60
ESDSEDEDLS GSNQAIENDV EEDDADVDDD EDGDGRSSYQ KQPREDESSS PDSRGKRRKL  120
TKFSFEFAPR AAAAAAAAAA PPTPIPLAAV VPSKPPPARK NPTEWMEDST FVLLDAWGTL  180
YLQNGRKSIR SDEWTEVAKK VNETSITPRT EAQCRNRLDT LKKKYKKEML RIEETMNSTS  240
NWVYFKKMEE LMGLPTPSPA LRNHHQPRVV SSGDYVEYAY PTNSRNYSNQ MNGLERRLRD  300
GSEQLVNNQN GEDLDESDDD ESDGLPPQSN KKSKSSGFLD SSSSRMLAES INAFGMIYER  360
IEKSRMKHLA ELERMRRDFH RDLEMQRRTI LERAQEELQK LRQEDEESED GDDDNNANDN  420
DEIDGSADNP SSREH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1364376RMKHLAELERMRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NLB30.0A0A0K9NLB3_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80902224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.15e-41Trihelix family protein