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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma84g00020.1 | ||||||||
Common Name | ZOSMA_84G00020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | Trihelix | ||||||||
Protein Properties | Length: 436aa MW: 49504.6 Da PI: 4.4541 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 39.7 | 1.2e-12 | 164 | 249 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergf.erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++ + +L++a + + +r++ + W ev+kk+ e+ + r+ qC+++++ l+k+ykk+ + ++ t +s+s+++yf+++e Zosma84g00020.1 164 EWMEDSTFVLLDAWGTLYLQNGRKSIRSDEWTEVAKKVNETSItPRTEAQCRNRLDTLKKKYKKEMLRIEE-TMNSTSNWVYFKKME 249 5*************************************9988868*******************9999888.688889********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.3E-17 | 164 | 251 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 436 aa Download sequence Send to blast |
MDDTDDDARY PPNPYHQNNN SRSQFPSSNR PKITIRATAA ASSPQIDRSS RYSKEELEED 60 ESDSEDEDLS GSNQAIENDV EEDDADVDDD EDGDGRSSYQ KQPREDESSS PDSRGKRRKL 120 TKFSFEFAPR AAAAAAAAAA PPTPIPLAAV VPSKPPPARK NPTEWMEDST FVLLDAWGTL 180 YLQNGRKSIR SDEWTEVAKK VNETSITPRT EAQCRNRLDT LKKKYKKEML RIEETMNSTS 240 NWVYFKKMEE LMGLPTPSPA LRNHHQPRVV SSGDYVEYAY PTNSRNYSNQ MNGLERRLRD 300 GSEQLVNNQN GEDLDESDDD ESDGLPPQSN KKSKSSGFLD SSSSRMLAES INAFGMIYER 360 IEKSRMKHLA ELERMRRDFH RDLEMQRRTI LERAQEELQK LRQEDEESED GDDDNNANDN 420 DEIDGSADNP SSREH* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 364 | 376 | RMKHLAELERMRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9NLB3 | 0.0 | A0A0K9NLB3_ZOSMR; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8090 | 22 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24490.1 | 5e-41 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma84g00020.1 |