PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zosma84g00020.1

Common Name

ZOSMA_84G00020

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

Trihelix

Protein Properties

Length: 436aa MW: 49504.6 Da PI: 4.4541

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma84g00020.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	39.7	1.2e-12	164	249	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergf.erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++ + +L++a + + +r++ + W ev+kk+ e+ + r+ qC+++++ l+k+ykk+ + ++ t +s+s+++yf+++e Zosma84g00020.1 164 EWMEDSTFVLLDAWGTLYLQNGRKSIRSDEWTEVAKKVNETSItPRTEAQCRNRLDTLKKKYKKEMLRIEE-TMNSTSNWVYFKKME 249 5***********************************9988868***************9999888.688889******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.3E-17	164	251	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence Send to blast
MDDTDDDARY PPNPYHQNNN SRSQFPSSNR PKITIRATAA ASSPQIDRSS RYSKEELEED 60 ESDSEDEDLS GSNQAIENDV EEDDADVDDD EDGDGRSSYQ KQPREDESSS PDSRGKRRKL 120 TKFSFEFAPR AAAAAAAAAA PPTPIPLAAV VPSKPPPARK NPTEWMEDST FVLLDAWGTL 180 YLQNGRKSIR SDEWTEVAKK VNETSITPRT EAQCRNRLDT LKKKYKKEML RIEETMNSTS 240 NWVYFKKMEE LMGLPTPSPA LRNHHQPRVV SSGDYVEYAY PTNSRNYSNQ MNGLERRLRD 300 GSEQLVNNQN GEDLDESDDD ESDGLPPQSN KKSKSSGFLD SSSSRMLAES INAFGMIYER 360 IEKSRMKHLA ELERMRRDFH RDLEMQRRTI LERAQEELQK LRQEDEESED GDDDNNANDN 420 DEIDGSADNP SSREH*

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence Send to blast

MDDTDDDARY PPNPYHQNNN SRSQFPSSNR PKITIRATAA ASSPQIDRSS RYSKEELEED  60
ESDSEDEDLS GSNQAIENDV EEDDADVDDD EDGDGRSSYQ KQPREDESSS PDSRGKRRKL  120
TKFSFEFAPR AAAAAAAAAA PPTPIPLAAV VPSKPPPARK NPTEWMEDST FVLLDAWGTL  180
YLQNGRKSIR SDEWTEVAKK VNETSITPRT EAQCRNRLDT LKKKYKKEML RIEETMNSTS  240
NWVYFKKMEE LMGLPTPSPA LRNHHQPRVV SSGDYVEYAY PTNSRNYSNQ MNGLERRLRD  300
GSEQLVNNQN GEDLDESDDD ESDGLPPQSN KKSKSSGFLD SSSSRMLAES INAFGMIYER  360
IEKSRMKHLA ELERMRRDFH RDLEMQRRTI LERAQEELQK LRQEDEESED GDDDNNANDN  420
DEIDGSADNP SSREH*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	364	376	RMKHLAELERMRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9NLB3	0.0	A0A0K9NLB3_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8090	22	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	5e-41	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Zosma84g00020.1