PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma83g00390.1
Common NameZOSMA_83G00390
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family FAR1
Protein Properties Length: 750aa    MW: 86789.8 Da    PI: 8.4035
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma83g00390.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR156.11.2e-1771162290
             FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                       Y ++A + GF+vrk ++k+s  ++   k+t+vCsk+gk++ +         ++++ r+  + rtgCka l++k    +kw+v+ ++++HnH++
  Zosma83g00390.1  71 LYYTFAGQKGFTVRKWSTKHS--KQGLRKKTYVCSKHGKSRAKIPVvdnlaeKKTKPRHIRNPRTGCKALLTIKTL-GEKWVVSIFSNNHNHDM 161
                      799*************99999..3447************999876678886666666677889***********99.9**************98 PP

             FAR1  90 a 90 
                      a
  Zosma83g00390.1 162 A 162
                      6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.9E-1571162IPR004330FAR1 DNA binding domain
PfamPF105513.8E-28284375IPR018289MULE transposase domain
PROSITE profilePS509669.619536596IPR007527Zinc finger, SWIM-type
SMARTSM005750.0043573598IPR006564Zinc finger, PMZ-type
PfamPF044344.3E-5573590IPR007527Zinc finger, SWIM-type
Gene3DG3DSA:4.10.60.105.6E-4725745IPR001878Zinc finger, CCHC-type
PROSITE profilePS501588.697730743IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 750 aa     Download sequence    Send to blast
MENFDSTVNH GGYDNMSFDT NFVDDQTNLE DMRYPDRDNM DEIPNDGDNP KIVEDPYVGM  60
LFESIKDVEE LYYTFAGQKG FTVRKWSTKH SKQGLRKKTY VCSKHGKSRA KIPVVDNLAE  120
KKTKPRHIRN PRTGCKALLT IKTLGEKWVV SIFSNNHNHD MATPSKKRFL KINRCITPFA  180
RNLIHNLEAT NIPPSQQYSY VAMQSGGLSN CSFTRTDFNN FRKTGKEILV SHDVDSLIQK  240
LKQLKEEDHN YYYSYSLDDE GSLRHLFWAD SRCIAEYGKY GEAVTFDTTY NTNKYKLIIG  300
FFCGVNNHLR TVLFGSGFIT NESTESFIWL FSEFKKCMGI APKTIITDQD AAMKTALSFE  360
FPDTFHRLCK WHITHKMCDK VRTVYRNKEE MERFNSILNT SDTIEQFETD WHKWTEDNNE  420
ANNKWLDDMF AIRERWCPIY MTEHFFGGMQ STQRSEGMNA LVKMNVKRSS TLFEFVCALE  480
LVLTSHRHKL DELDHRDRDA PPHIITALTI ECSLHSIYTT EVFLLFQQQV QKSMIYYIRV  540
NPQDSMEFSV VCMFTQVECA KIHCPHEQGT PVCTCRMFSS KAIPCRHVIA FLTSQGITSL  600
PNEFICDRWK MTPYTNIEQS NVEKQPPNAL NDVFNRCSRI ISAKREIQDT LIARMDMFLN  660
DFQQNHSIII EPGIARSITR FEERITSPPV VGNPKIAKTK GSGKNTGRPS KADPRFKSTR  720
EIVVKRPRAC KKCNEAGHDS RNCAKQYYK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NM450.0A0A0K9NM45_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-94FAR1-related sequence 5