PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma83g00210.1 | ||||||||
Common Name | ZOSMA_83G00210 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | ZF-HD | ||||||||
Protein Properties | Length: 258aa MW: 28841.4 Da PI: 6.786 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 92.5 | 3.6e-29 | 56 | 111 | 4 | 60 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 ++Y+eClkNhAas+Gg+a+DGCgEfm+ g egt++a++C+AC CHRnFHR+ ve e Zosma83g00210.1 56 TKYRECLKNHAASIGGNATDGCGEFMAG-GGEGTMEAFQCSACRCHRNFHRKVVEGE 111 78*************************9.8899*******************98865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 3.4E-26 | 56 | 108 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 5.0E-11 | 57 | 111 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.5E-26 | 57 | 106 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.065 | 58 | 107 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-29 | 188 | 256 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.19E-18 | 189 | 255 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 4.5E-27 | 194 | 250 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MDVSIHEEGE DTKYHVGDYP TSNGLPLCIT DENNNNNTNN NNNNEEEEEV VEVVATKYRE 60 CLKNHAASIG GNATDGCGEF MAGGGEGTME AFQCSACRCH RNFHRKVVEG ENTLDLYHNF 120 KGRNMMVPKG VMISGSADHH LYGGYNSTHN SLMPISSPPH YMIMPLGAMQ TSESDDMEGV 180 AVGGMPRPQP LMTKKRYRTK FTSDQKEKML GFAERAGWKL QKQEENVVQN FCQEIGVKRR 240 VLKVWMHNNK HNLAKKP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh5_A | 3e-24 | 194 | 252 | 17 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009421143.1 | 3e-96 | PREDICTED: zinc-finger homeodomain protein 4-like | ||||
Swissprot | Q9M9S0 | 7e-63 | ZHD4_ARATH; Zinc-finger homeodomain protein 4 | ||||
TrEMBL | A0A0K9NLN4 | 0.0 | A0A0K9NLN4_ZOSMR; Zinc finger-homeodomain protein 1 | ||||
STRING | XP_008808961.1 | 6e-94 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP815 | 35 | 145 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14440.2 | 5e-52 | homeobox protein 31 |
Link Out ? help Back to Top | |
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Phytozome | Zosma83g00210.1 |