PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma81g00950.1

Common Name

ZOSMA_81G00950

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

bHLH

Protein Properties

Length: 400aa MW: 44610 Da PI: 4.8074

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma81g00950.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.5	3.7e-11	244	289	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR++i +++ +L l+P++ K +Ka++L + ++Y+k Lq Zosma81g00950.1 244 HSIAERIRREKIAERMKNLHALIPSS-----NKTDKASMLDEIIDYVKFLQ 289 99*********************7.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.51E-12	237	293	No hit	No description
SuperFamily	SSF47459	2.75E-15	237	298	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.253	239	288	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.5E-15	240	296	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-8	244	289	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.3E-12	245	294	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MDAFIDYILP PLVSSWSNFD QSQDLSSGGD GETVSQTTSA MFHECIHRNT SQNLFDHSEN 60 MIFQESNLVR MNNVQNTSFF GLDDFKCHHN LCCFSDNQLR REFLNCNTNL PTQPRNLIPD 120 LRLSFPVTDQ GDDSNPLSTF SPQLLDDSQS TSAAPPQLWS SVYSGVHSLL MDQINSQNSK 180 LFMQHEHECC QISQSSESNP NQAYVNPNPP ITQEQLPMPV NANSPNGSVK PRMRAKRGQA 240 TDPHSIAERI RREKIAERMK NLHALIPSSN KTDKASMLDE IIDYVKFLQL QVKVLNISRF 300 GMGSLSTNIT PEETGSSLLP TLYMGGTDQS DLEEDDILLF EQEVMKLMES NISTAMQYLQ 360 TKGLCLMPTA LANTISIKKD TSAASIAPAK KNSDTSFPW*

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MDAFIDYILP PLVSSWSNFD QSQDLSSGGD GETVSQTTSA MFHECIHRNT SQNLFDHSEN  60
MIFQESNLVR MNNVQNTSFF GLDDFKCHHN LCCFSDNQLR REFLNCNTNL PTQPRNLIPD  120
LRLSFPVTDQ GDDSNPLSTF SPQLLDDSQS TSAAPPQLWS SVYSGVHSLL MDQINSQNSK  180
LFMQHEHECC QISQSSESNP NQAYVNPNPP ITQEQLPMPV NANSPNGSVK PRMRAKRGQA  240
TDPHSIAERI RREKIAERMK NLHALIPSSN KTDKASMLDE IIDYVKFLQL QVKVLNISRF  300
GMGSLSTNIT PEETGSSLLP TLYMGGTDQS DLEEDDILLF EQEVMKLMES NISTAMQYLQ  360
TKGLCLMPTA LANTISIKKD TSAASIAPAK KNSDTSFPW*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020241185.1	1e-68	transcription factor bHLH7-like
Refseq	XP_020241187.1	1e-68	transcription factor bHLH7-like
TrEMBL	A0A0K9NP72	0.0	A0A0K9NP72_ZOSMR; Uncharacterized protein
STRING	XP_008797366.1	3e-61	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3254	38	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30980.1	5e-42	LJRHL1-like 2

Link Out ? help Back to Top
Phytozome	Zosma81g00950.1