PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma81g00950.1
Common NameZOSMA_81G00950
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 400aa    MW: 44610 Da    PI: 4.8074
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma81g00950.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.53.7e-11244289555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h+++Er RR++i +++ +L  l+P++      K +Ka++L + ++Y+k Lq
  Zosma81g00950.1 244 HSIAERIRREKIAERMKNLHALIPSS-----NKTDKASMLDEIIDYVKFLQ 289
                      99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.51E-12237293No hitNo description
SuperFamilySSF474592.75E-15237298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.253239288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-15240296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-8244289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-12245294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MDAFIDYILP PLVSSWSNFD QSQDLSSGGD GETVSQTTSA MFHECIHRNT SQNLFDHSEN  60
MIFQESNLVR MNNVQNTSFF GLDDFKCHHN LCCFSDNQLR REFLNCNTNL PTQPRNLIPD  120
LRLSFPVTDQ GDDSNPLSTF SPQLLDDSQS TSAAPPQLWS SVYSGVHSLL MDQINSQNSK  180
LFMQHEHECC QISQSSESNP NQAYVNPNPP ITQEQLPMPV NANSPNGSVK PRMRAKRGQA  240
TDPHSIAERI RREKIAERMK NLHALIPSSN KTDKASMLDE IIDYVKFLQL QVKVLNISRF  300
GMGSLSTNIT PEETGSSLLP TLYMGGTDQS DLEEDDILLF EQEVMKLMES NISTAMQYLQ  360
TKGLCLMPTA LANTISIKKD TSAASIAPAK KNSDTSFPW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020241185.11e-68transcription factor bHLH7-like
RefseqXP_020241187.11e-68transcription factor bHLH7-like
TrEMBLA0A0K9NP720.0A0A0K9NP72_ZOSMR; Uncharacterized protein
STRINGXP_008797366.13e-61(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32543879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.15e-42LJRHL1-like 2