PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma81g00290.1
Common NameZOSMA_81G00290
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family Trihelix
Protein Properties Length: 400aa    MW: 46274.8 Da    PI: 7.9203
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma81g00290.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix92.64.1e-29123208187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      rW++qe+l+L+e+r++++ ++++++ k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r  ++ +++++f+ql+a
  Zosma81g00290.1 123 RWPRQETLTLLEIRSQLDPKFKESAHKAPLWDEVSRMMaEEHGYQRSGKKCREKLENLYKYYKKTKEGRAGR--QDGKHYRFFKQLDA 208
                      8*************************************999*****************************98..55667*******85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.097116181IPR017877Myb-like domain
PfamPF138376.9E-20123209No hitNo description
CDDcd122035.16E-21123188No hitNo description
PROSITE profilePS500904.228279335IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010200Biological Processresponse to chitin
GO:0046621Biological Processnegative regulation of organ growth
GO:0048442Biological Processsepal development
GO:0048498Biological Processestablishment of petal orientation
GO:0090428Biological Processperianth development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MDQIGETRYG FNELRQLMMP TPTPTPTPAP TPAPTHHHLH QPEPYGMVMM GGMDMSMNMN  60
MNMNINMNAS SSSIPPHHPL ENTTLTTTST SIPAEQQQQQ HRSMEAMYGA FFEDNGSGYS  120
QGRWPRQETL TLLEIRSQLD PKFKESAHKA PLWDEVSRMM AEEHGYQRSG KKCREKLENL  180
YKYYKKTKEG RAGRQDGKHY RFFKQLDALY GSSQTRTTAA AAATTTTGEG QIPLLSLPDE  240
ADHIFEPEPP LPPSNSASEL YTTSTSRSSS DEHSHRKRRR RRKGESWREK MKDFVDEQVK  300
KFMDMQESLW EKMIQAVENK ERERISREEQ WRRQESARLD LESRNRARER AWIDARNKVL  360
MDALDKATNI VISSRRLINN VDDDRRRWNE GSNEMDMDG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1275279RKRRR
2276281KRRRRR
3276282KRRRRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NP070.0A0A0K9NP07_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2292266
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.18e-51Trihelix family protein