PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma81g00260.1
Common NameZOSMA_81G00260
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family B3
Protein Properties Length: 138aa    MW: 15486.8 Da    PI: 4.5157
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma81g00260.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.41.1e-1230115189
                      EEEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS
               B3   1 ffkvltpsdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.se 89 
                      ff+  +++++ ks  +lv+p++f  ++  +++ ++tl  ++     We+++   + +gr   + +GWk F+ +n+Lk gD +vF+l ++ ++
  Zosma81g00260.1  30 FFTCIVTKSNIKSpFQLVIPRSFQ-DYLPPTTVPTTLFCRN---GIWELNY--FGDKGRlKRFDQGWKTFALENDLKIGDACVFELLQSgED 115
                      5666666666666699*******7.8866666777788666...99*****..55555546899*********************9875333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.32E-1726125IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-1827125IPR015300DNA-binding pseudobarrel domain
CDDcd100171.12E-1229125No hitNo description
SMARTSM010197.0E-1030122IPR003340B3 DNA binding domain
PfamPF023626.1E-1130115IPR003340B3 DNA binding domain
PROSITE profilePS5086310.88431127IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MGKKDSDETS LVVYRSQIEF PVVPLSGNPF FTCIVTKSNI KSPFQLVIPR SFQDYLPPTT  60
VPTTLFCRNG IWELNYFGDK GRLKRFDQGW KTFALENDLK IGDACVFELL QSGEDLLIFA  120
VQILDGTVPI FSIVVDE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020085306.15e-36B3 domain-containing protein Os04g0386900-like
RefseqXP_020085307.15e-36B3 domain-containing protein Os04g0386900-like
TrEMBLA0A0K9NLZ74e-95A0A0K9NLZ7_ZOSMR; B3 domain-containing protein
STRINGXP_010276851.12e-34(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89543545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-08B3 family protein