PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma81g00260.1 | ||||||||
Common Name | ZOSMA_81G00260 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | B3 | ||||||||
Protein Properties | Length: 138aa MW: 15486.8 Da PI: 4.5157 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 39.4 | 1.1e-12 | 30 | 115 | 1 | 89 |
EEEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS B3 1 ffkvltpsdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.se 89 ff+ +++++ ks +lv+p++f ++ +++ ++tl ++ We+++ + +gr + +GWk F+ +n+Lk gD +vF+l ++ ++ Zosma81g00260.1 30 FFTCIVTKSNIKSpFQLVIPRSFQ-DYLPPTTVPTTLFCRN---GIWELNY--FGDKGRlKRFDQGWKTFALENDLKIGDACVFELLQSgED 115 5666666666666699*******7.8866666777788666...99*****..55555546899*********************9875333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.32E-17 | 26 | 125 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.5E-18 | 27 | 125 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.12E-12 | 29 | 125 | No hit | No description |
SMART | SM01019 | 7.0E-10 | 30 | 122 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.1E-11 | 30 | 115 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.884 | 31 | 127 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 138 aa Download sequence Send to blast |
MGKKDSDETS LVVYRSQIEF PVVPLSGNPF FTCIVTKSNI KSPFQLVIPR SFQDYLPPTT 60 VPTTLFCRNG IWELNYFGDK GRLKRFDQGW KTFALENDLK IGDACVFELL QSGEDLLIFA 120 VQILDGTVPI FSIVVDE* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020085306.1 | 5e-36 | B3 domain-containing protein Os04g0386900-like | ||||
Refseq | XP_020085307.1 | 5e-36 | B3 domain-containing protein Os04g0386900-like | ||||
TrEMBL | A0A0K9NLZ7 | 4e-95 | A0A0K9NLZ7_ZOSMR; B3 domain-containing protein | ||||
STRING | XP_010276851.1 | 2e-34 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8954 | 35 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-08 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma81g00260.1 |