PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma7g01330.1
Common NameZOSMA_7G01330
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C2H2
Protein Properties Length: 237aa    MW: 26541.9 Da    PI: 9.0789
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma7g01330.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.5e-0579101123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ C k F++   L  H+++H
  Zosma7g01330.1  79 YTCSFCRKEFRSAQALGGHMNVH 101
                     9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.46E-776105No hitNo description
Gene3DG3DSA:3.30.160.602.9E-477103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139126.7E-679102IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.40679106IPR007087Zinc finger, C2H2
SMARTSM003550.003579101IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MLKIYKNVTM DVAKEKSRYW LWSLNKFGEN TSLCVPSSSF AANGIPAAGD HVETWEELAF  60
ATDSSGRLGS SCVWPPRSYT CSFCRKEFRS AQALGGHMNV HRRDRARLKQ FSSQETYNST  120
PVDGDCRTLL GHHNYHSRQQ LQLLHHDLNL SCPTSSTTCA TIRENCYSSS DYRKASLFVQ  180
RKRSSSLYGH VGLDLMIGEN TTNHMSMGIN ITKKPKSGKA GERELDLELR LGDRPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A5e-1374101229superman protein
2l1o_A5e-1374101229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NPX21e-177A0A0K9NPX2_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95942840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.14e-27zinc-finger protein 10