PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma78g00380.1
Common NameZOSMA_78G00380
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 334aa    MW: 36850.4 Da    PI: 6.251
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma78g00380.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.31e-1652100254
                      HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r +h++ E+rRR++iN++f+ Lrel+P++    ++K +Ka+ L +++eY++ L
  Zosma78g00380.1  52 RSKHSATEQRRRSKINDRFQILRELIPQS----DQKRDKASFLLEVIEYVQFL 100
                      889*************************9....9****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.5E-2248121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-1849118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.74950100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.48E-1452105No hitNo description
PfamPF000103.2E-1452100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.9E-1256106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MDSGSKSGKG FTDEDEDDEE FGRREGSSLK ELTVKTDRRG NQNNNQKAST PRSKHSATEQ  60
RRRSKINDRF QILRELIPQS DQKRDKASFL LEVIEYVQFL HDKLQKYEAG FHGWGQESTK  120
LIPWKHNQVL PIDSIGDHSQ TLHGSSASRF VFSGDNAIPV APVQLTNDHS QLEPLNVNSG  180
LPHKESSLPS TFQQYSNSRG VIQPLQRLST DLENIASQSQ SQCLRQCSGS ASDNVVNEEE  240
LTIDEGTISI SSAYSEGLLN ALTESLQNSG IDLSQASVSV KINLGKRAFS RSGSNPKDHE  300
DPSFGNQVIG QSQMGSTIDI PERANKRPKP DKS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010943317.11e-101transcription factor BIM2 isoform X2
TrEMBLA0A0K9NQM60.0A0A0K9NQM6_ZOSMR; Transcription factor BIM2
STRINGXP_008783041.15e-95(Phoenix dactylifera)
STRINGXP_008788920.12e-93(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.14e-61BES1-interacting Myc-like protein 2