PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma76g01060.1
Common NameZOSMA_76G01060
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 298aa    MW: 33465.4 Da    PI: 6.2913
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma76g01060.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.71e-1379130155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +r++h ++Er+RR+++N+ ++ Lr+l+P +   + ++ + a+i+  A++++k+L+
  Zosma76g01060.1  79 QRMTHIAVERNRRRQMNEHLSVLRSLMPDS---YVQRGDQASIVGGAIDFVKELE 130
                      79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-1777146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.21E-1377134No hitNo description
PROSITE profilePS5088815.47278129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-1179130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.5E-1479147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-1184135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MTLETLSSSE ISNFLIYDTV ATTALPDSYY LHPSTFNFVV DDDDLCGGDL VHAGEDASER  60
KKRRRRTRTS KNKEEAENQR MTHIAVERNR RRQMNEHLSV LRSLMPDSYV QRGDQASIVG  120
GAIDFVKELE QLLQSLETQK RRLREVTNNE RRRPTTTTAD GDSPPFSQFF TYPQYTWCQA  180
PRENETAENH NRLHRATTTS TADIEVTIIE KHTNLRILTH KRPGHLLKIV GGLEALQLTI  240
LHLNATTLDP MALYSISAKV EEGCNLTTVD DIAASVHRML SQIEDEATAT AAAAATN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15965RKKRRRR
26065KKRRRR
37990RMTHIAVERNRR
4139152KRRLREVTNNERRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010919940.21e-112transcription factor bHLH71 isoform X2
SwissprotQ9C7T42e-71BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0K9NP700.0A0A0K9NP70_ZOSMR; Basic helix-loop-helix (BHLH) DNA-binding superfamily
STRINGXP_008796282.11e-104(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37123678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.17e-64bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]