PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma76g01020.1
Common NameZOSMA_76G01020
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 506aa    MW: 56403.7 Da    PI: 5.904
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma76g01020.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.44e-11345390454
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      +h e+Er+RR+++N +f+ Lr+++P+a      K  Ka+    A+ +I++L
  Zosma76g01020.1 345 NHVEAERQRREKLNLKFDALRSVVPNA-----SKIGKAALIGDAITHINHL 390
                      799***********************9.....7*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.1E-4850229IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088814.919341390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-15343409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.06E-11344390No hitNo description
PfamPF000101.7E-8345390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-14345410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-10347396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MNTWNLQDWM PPPQPLTPDT SNLLLPSASP FDPTFFPSSN KIAHFNQETL HQRLQSLIDG  60
SPWTYAIFWQ TSFDPITGDD SNLGWSDGYY KGSEMEKWRR PKSMANPGEQ EHRKRVLREL  120
NSFIVDGSSE DAIDVNDEVT DTEWFFLVSM THSFGRDDGV LGKAYFSGSP MWLACVGISG  180
STRERVVQAG GFGIQTMVCF PVMGGVVELG STEIIHQNVD IENKVRFLFP FDIGTSTAAT  240
TTSVQISSVT ETKTEHNDPD SYNKEVNLSS YGVNPAPAMM DPMTNFGLYD NTQDEMYLSF  300
EAELKQHSEN SVVALDNDNE EEVQVPRPKK KRGRKPANGR KEPLNHVEAE RQRREKLNLK  360
FDALRSVVPN ASKIGKAALI GDAITHINHL TSKTHVLESD NHRLKCQLEN SSIISGARTA  420
MVGGGGVDID VEVINGEGSI RARCEKKNHP AARLMVALMQ MDIDVIHATM SVVKDTMIQK  480
VIIRMSERKQ LTKEQLTSVL LSKLR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A4e-49442323195Transcription factor MYC3
4rqw_B4e-49442323195Transcription factor MYC3
4rs9_A4e-49442323195Transcription factor MYC3
4yz6_A4e-49442323195Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NR390.0A0A0K9NR39_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44523157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.17e-91bHLH family protein